Gene detail information of Glyur000755s00017999.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10790.19.00E-137ubiquitin-specific protease 22
NRXP_004508434.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Cicer arietinum]
COGYP_006705230.19.00E-08Ubiquitin specific protease [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|Q9LEW0|UBP22_ARATH2.00E-169Ubiquitin carboxyl-terminal hydrolase 22
trEMBLtr|V7CCJ0|V7CCJ0_PHAVU0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00755112370116846+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0008270  zinc ion binding

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000755s00017999.1PF02148.14zf-UBP561238.20E-11
Glyur000755s00017999.1PF00443.24UCH1975752.90E-60


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.416
SRR1783600control31.830
SRR1783602moderate drought stress33.530
SRR1811619moderate drought stress33.138

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.946
DRR006520Root Summer glycyrrhizin high producing strain22.152
DRR006521Root Winter glycyrrhizin high producing strain23.172
DRR006522Root Winter glycyrrhizin high producing strain22.424
DRR006523Root Summer glycyrrhizin low producing strain14.759
DRR006524Root Summer glycyrrhizin low producing strain14.882
DRR006525Leaf Summer glycyrrhizin high producing strain5.630
DRR006526Leaf Summer glycyrrhizin high producing strain5.539

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.833
SRR2868004Drought Stress(Tissue:root)17.891
SRR2967015Control (Tissue:root)20.346

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.050
SRR9715740Leave6.790
SRR9715741Leave8.209
SRR9715739Root16.020
SRR9715742Root16.756
SRR9715743Root13.935

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.544
SRR8749028MeJA induced 9h20.399
SRR8749029MeJA induced 9h17.291
SRR8749030Uninduced11.778
SRR8749031Uninduced7.649
SRR8749032Uninduced11.039

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.884
SRR8400027Control-Root19.633

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved