Gene detail information of Glyur000756s00019306.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G51820.1 | 2.00E-148 | UbiA prenyltransferase family protein |
| NR | XP_004492466.1 | 0 | PREDICTED: chlorophyll synthase, chloroplastic-like isoform X2 [Cicer arietinum] |
| COG | YP_007068418.1 | 3.00E-150 | chlorophyll synthase [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q38833|CHLG_ARATH | 0 | Chlorophyll synthase, chloroplastic (Precursor) |
| trEMBL | tr|A0A072U0L0|A0A072U0L0_MEDTR | 0 | Bacteriochlorophyll synthase, putative {ECO:0000313|EMBL:KEH23212.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00756 | 51864 | 57648 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04040 | chlG, bchG | EC:2.5.1.62 2.5.1.133 | Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000756s00019306.1 | PF01040.13 | UbiA | 99 | 357 | 1.30E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.962 |
| SRR1783600 | control | 13.322 |
| SRR1783602 | moderate drought stress | 8.411 |
| SRR1811619 | moderate drought stress | 8.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.683 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.477 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.890 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.552 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.465 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.881 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.824 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.966 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.965 |
| SRR2967015 | Control (Tissue:root) | 24.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 35.036 |
| SRR9715740 | Leave | 33.302 |
| SRR9715741 | Leave | 37.075 |
| SRR9715739 | Root | 12.745 |
| SRR9715742 | Root | 20.700 |
| SRR9715743 | Root | 18.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.085 |
| SRR8749028 | MeJA induced 9h | 11.070 |
| SRR8749029 | MeJA induced 9h | 9.483 |
| SRR8749030 | Uninduced | 3.052 |
| SRR8749031 | Uninduced | 0.958 |
| SRR8749032 | Uninduced | 2.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 42.612 |
| SRR8400027 | Control-Root | 42.043 |