Gene detail information of Glyur000756s00019314.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13080.1 | 5.00E-67 | xyloglucan endotransglucosylase/hydrolase 1 |
| NR | XP_003595540.1 | 1.25E-135 | Xyloglucan xyloglucosyl transferase [Medicago truncatula] |
| COG | YP_003830841.1 | 1.00E-12 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| Swissprot | tr|Q9SV60|XTH2_ARATH | 3.00E-82 | Xyloglucan endotransglucosylase/hydrolase protein 2 (Precursor) |
| trEMBL | tr|G7IGM6|G7IGM6_MEDTR | 5.00E-136 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00756 | 103355 | 104790 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000756s00019314.1 | PF00722.16 | Glyco_hydro_16 | 29 | 205 | 1.20E-46 |
| Glyur000756s00019314.1 | PF06955.7 | XET_C | 239 | 276 | 1.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.127 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.123 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.929 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.106 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.138 |
| SRR2967015 | Control (Tissue:root) | 0.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.152 |
| SRR9715740 | Leave | 0.774 |
| SRR9715741 | Leave | 0.596 |
| SRR9715739 | Root | 0.002 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.046 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.074 |
| SRR8749031 | Uninduced | 0.222 |
| SRR8749032 | Uninduced | 0.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.058 |
| SRR8400027 | Control-Root | 0.230 |