Gene detail

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Gene detail information of Glyur000756s00019315.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27030.1	0	TOPLESS-related 3
NR	XP_003626186.1	0	hypothetical protein MTR_7g112460 [Medicago truncatula]
COG	YP_007116197.1	1.00E-11	WD-40 repeat-containing protein [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q84JM4\|TPR3_ARATH	0	Topless-related protein 3
trEMBL	tr\|G7KWJ2\|G7KWJ2_MEDTR	0	Topless-like protein {ECO:0000313\|EMBL:AES82404.1}

Sequence

Transcript Sequence

>Glyur000756s00019315.1
ATGCCTGATAGGTCAGTAGAAAAGGAAAGACCCCCCCTTCTGTACAACGCATCGAAGATAGCGCGACCAAGTCTCTTCATTTCTCTCTCCTCTTTTCTTATCCGCAGCCTTTCAAACCCTAGAATTTCTCGAACTCGGAGCTTGTGCAATCCTCAAGAAGAAGCTCTGAAATTTGAGGTTGAGGACTCTGTATCGGTGTTCAAAGATCGAGATTATTGGTGCGTTTCAGATTTGAGGACCCGAAATGACTTCTTTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAGGAGAAGTTCAAAGAGTCCGTACACAATACTTTGAGGAAAAGGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGAAAGCAGAAATATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTGGGGGGTGATTTAAAAGTATTCTCCACCTTCAATGAGGAGCTATACAAAGAAATCACCCTGCTGTTAACTCTCAATAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGTTGATCGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTGTTCCGTGATAAGCTTATCTTCCCTACTCTTAAGTCATCAAGATTGCGGACATTAATCAACCAAAGTTTGAACTGGCAACACCAACTTTGCAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTCACTGATCACACATGTACACCTCCTAATGGTCCTCTAGCACCCACACCTGTCAATCTACCAGTTGCTGCTGTTGCAAAGCCCACTGCGTATCCTTCACTTGGAGCTCATGGTCCTTTTCCACCTGCCGCAGCAACCGCAAATGCTAATGCATTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTTCAACAACTCCTGGCATGGTTGATTATCAGAATGCTGATCATGAACAGCTAATGAAAAGACTCCGACCTGCTCCTTCTGTCGAGGAGGTATCCTATCCTACTGCTCGGCAAGCCTCTTGGTCGCTGGATGATCTTCCAAGAACGGTAGCTATGACTTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCACCAAACCTTACTCCTTGTTGGTTCTCATAACGGTGAAATTTCTCTTTGGGAACTTGGGTTGCGAGAAAGGTNGGTCTCAAAGCCATTCAAGATATGGGATATATCAGCGTGCTCATTGCCATTTCAGGCAGCTATGGTCAAAGATGCACCTATTTCTGTTAGCCGTGTCACATGGAGCCTTGATGGAAGTTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGANCTGGCCCAGCGTATAGAGATTGATGCCCATATTGGTGGTGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTATGTATCGTGACTTGTGGAGACGATAAGTTGATAAAGGTGTGGGATTTAACTGGACGAAGACTATTTAACTTTGAAGGGCATGAGGCACCTGTATATTCCATCTGTCCTCATCACAAGGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGACAATATGGGTTCTCGGGTTGACTATGATGCCCCTGGTCACTGGTGTACTACAATGCTTTATAGTGCTGATGGAAGTAGATTATTTTCTTGTGGGACGAGTAAGGACGGAGAGTCATTCCTTGTCGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACATATAATGGGTTCAGAAAGAAATCTAATGGTGTCATGCAGTTTGACACAACNCAAAATCGCTTTTTGGCTGCTGGTGAAGACGGACAAATCAAGTTTTGGGACATGGACAATGTTAATCCTCTAACAAGCACTGATGCGGAGGGTGGGCTACAGGGCCTTCCACACTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTGTTGGTACTGCAGATAATGGATTCAAAATTCTTGCTAATGCTAGTGGTCTTAGATCCCTAAGAACAATTGAAACGCCAGCATTTGAAGCACTGAGGTCACCCGTTGAATCTGCTGCAATCAAGGTATCTGGCTCTTCTGCTGTTAATATTAGTCCTGTCAGCTGTAAAGTGGAAAGGAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCATGTGAGTCGAAATGTGGAGAAACCTAGAACAGTGGAAGATGTAATAGATAGAACTAAACCATGGCAGCTGTCTGAAATTGTGGATCCTGTCCAGTGTCGGTTAGTTACCATGCCTGACAGCACAGATTCTTCCAGCAAGGTCATCCGNCTTTTATATACAAATTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACTGCCAGTGTTGTTCCTCAGCATTGGCAACCCAACAGNGGTCTTCTTATGACTAATGATATCACGGGTGTCAACCTTGATGAAGCGGTTCCTTGCATTGCACTCTCNAAGAATGATTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCTTTATTTAACATGATGACATTCAAGGTAATGACAACATTCATACAACCACCTCCTGCCTCTACCTTTCTGGCTTTCCACCCTCAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACCATTCATATTTATAACGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCAATCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCATCTTTGTGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATTCCTATTCAACTACCCGCGGGAAAGGCTCCTGTTGGTGACACTCGAGTGCAGTTCCATTCAGACCAACTCCGGCTATTGGTAGCCCATGAGACTCAGTTGGCAATATACGATGCCTCTAAGATGGAACGCATTCGTCAGTGGGTTCCACAAGATGTTCTGCCGGCTCCCATATCACATGCAGCTTACTCCTGCAACAGTCAGTTAATCTATGCTTCATTTTGCGATGGCAACACTGGTGTTTTCGATGCTGACAGCTTGAGACTAAGATGTCGTATCGCACCATCGACATACTTTTCAACAGCGGCTTTGAGTGGAAGCCAAGCAGTGTACCCTGTTGTTGTGGCGGCTCATCCGCTAGAGGCCAACCAATTTGCCCTTGGATTGTCAGATGGGTCCGTCAAAGTGATAGAGCCCAGTGAATCAGAGGGGAAGTGGGGATCTAATCCTCCGGTGGATAATGGAATGTTGAATGGTAGGACAGCATCATCAACAAGCAACCACACACCTGATCAGGCACAACGATAAATAAGAACATTCATTGTATCATACTTAGCATATTCTTTCCATCTGTAATTTTATATCAGCTTAGATTTTTAGATTTTGGTTCCTCTCCATTTGTCCCTCGCCAAGGTCTTGGTCAGGGGTCAACTTGGACATAAAACGGTAAATGTTTAGTTGTATGCTCTTGTATACCTACATTTGTTCCAGTCAACTCAATCACATTGTTTATACTTTATTGTAGTGTAGTGTATCTGTTTCTTGATAACAATGT

Protein Sequence

>Glyur000756s00019315.1
MPDRSVEKERPPLLYNASKIARPSLFISLSSFLIRSLSNPRISRTRSLCNPQEEALKFEVEDSVSVFKDRDYWCVSDLRTRNDFFEQRIGVSHTPISGGGEVQRVRTQYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILGGDLKVFSTFNEELYKEITLLLTLNNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPTAYPSLGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPSTTPGMVDYQNADHEQLMKRLRPAPSVEEVSYPTARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSHNGEISLWELGLRERXVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGSFVGVAFTKHLIHLYAYTGSNXLAQRIEIDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVMQFDTTQNRFLAAGEDGQIKFWDMDNVNPLTSTDAEGGLQGLPHLRFNKEGNLLAVGTADNGFKILANASGLRSLRTIETPAFEALRSPVESAAIKVSGSSAVNISPVSCKVERSSPVRPSPILNGVDHVSRNVEKPRTVEDVIDRTKPWQLSEIVDPVQCRLVTMPDSTDSSSKVIRLLYTNSGAGLLALGSNGVQKLWKWARNEQNPTGKATASVVPQHWQPNXGLLMTNDITGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFIQPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLPAGKAPVGDTRVQFHSDQLRLLVAHETQLAIYDASKMERIRQWVPQDVLPAPISHAAYSCNSQLIYASFCDGNTGVFDADSLRLRCRIAPSTYFSTAALSGSQAVYPVVVAAHPLEANQFALGLSDGSVKVIEPSESEGKWGSNPPVDNGMLNGRTASSTSNHTPDQAQR

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00756	105866	115220	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000756s00019315.1	PF00400.27	WD40	415	443	0.0055
Glyur000756s00019315.1	PF00400.27	WD40	517	551	4.10E-06
Glyur000756s00019315.1	PF00400.27	WD40	557	593	0.0025
Glyur000756s00019315.1	PF00400.27	WD40	975	1012	7.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.989
SRR1783600	control	34.291
SRR1783602	moderate drought stress	40.577
SRR1811619	moderate drought stress	40.340

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.540
DRR006520	Root Summer glycyrrhizin high producing strain	38.418
DRR006521	Root Winter glycyrrhizin high producing strain	43.179
DRR006522	Root Winter glycyrrhizin high producing strain	42.040
DRR006523	Root Summer glycyrrhizin low producing strain	38.437
DRR006524	Root Summer glycyrrhizin low producing strain	38.576
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.080
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	56.738
SRR2868004	Drought Stress(Tissue:root)	72.338
SRR2967015	Control (Tissue:root)	77.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.395
SRR9715740	Leave	30.269
SRR9715741	Leave	42.311
SRR9715739	Root	23.795
SRR9715742	Root	55.706
SRR9715743	Root	50.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.430
SRR8749028	MeJA induced 9h	40.047
SRR8749029	MeJA induced 9h	21.579
SRR8749030	Uninduced	32.794
SRR8749031	Uninduced	48.360
SRR8749032	Uninduced	35.961

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	56.747
SRR8400027	Control-Root	55.378