Gene detail information of Glyur000757s00023970.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G58230.10binding
NRXP_004501660.10PREDICTED: BEACH domain-containing protein lvsC-like [Cicer arietinum]
COGYP_007081586.11.00E-15WD40 repeat-containing protein [Pleurocapsa sp. PCC 7327]
trEMBLtr|G7J4K4|G7J4K4_MEDTR0BEACH domain LvsC-like protein, putative {ECO:0000313|EMBL:AES73140.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007573504665963+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000757s00023970.1PF13385.1Laminin_G_3109212661.80E-11
Glyur000757s00023970.1PF14844.1PH_BEACH250125597.40E-12
Glyur000757s00023970.1PF02138.13Beach259728741.10E-108
Glyur000757s00023970.1PF00400.27WD40301130465.00E-07
Glyur000757s00023970.1PF00400.27WD40307431070.00069


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.008
SRR1783600control10.050
SRR1783602moderate drought stress13.476
SRR1811619moderate drought stress13.450

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.232
DRR006520Root Summer glycyrrhizin high producing strain9.220
DRR006521Root Winter glycyrrhizin high producing strain10.988
DRR006522Root Winter glycyrrhizin high producing strain10.633
DRR006523Root Summer glycyrrhizin low producing strain9.387
DRR006524Root Summer glycyrrhizin low producing strain9.344
DRR006525Leaf Summer glycyrrhizin high producing strain5.402
DRR006526Leaf Summer glycyrrhizin high producing strain5.368

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.687
SRR2868004Drought Stress(Tissue:root)26.435
SRR2967015Control (Tissue:root)25.024

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.857
SRR9715740Leave9.467
SRR9715741Leave12.225
SRR9715739Root1.377
SRR9715742Root16.063
SRR9715743Root14.719

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.785
SRR8749028MeJA induced 9h15.833
SRR8749029MeJA induced 9h6.919
SRR8749030Uninduced12.569
SRR8749031Uninduced12.903
SRR8749032Uninduced9.087

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.922
SRR8400027Control-Root22.764

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved