Gene detail information of Glyur000757s00023972.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24470.22.00E-66GATA-type zinc finger protein with TIFY domain
NRXP_004501661.14.77E-127PREDICTED: GATA transcription factor 25-like [Cicer arietinum]
Swissprottr|Q9LRH6|GAT25_ARATH3.00E-80GATA transcription factor 25
trEMBLtr|G7J4K3|G7J4K3_MEDTR6.00E-120GATA transcription factor {ECO:0000313|EMBL:AES73139.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007576722371348+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000757s00023972.1PF06200.9tify54846.40E-13
Glyur000757s00023972.1PF06203.9CCT1191622.80E-16
Glyur000757s00023972.1PF00320.22GATA1842207.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.828
SRR1783600control41.972
SRR1783602moderate drought stress39.798
SRR1811619moderate drought stress38.154

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.215
DRR006520Root Summer glycyrrhizin high producing strain48.163
DRR006521Root Winter glycyrrhizin high producing strain20.775
DRR006522Root Winter glycyrrhizin high producing strain20.933
DRR006523Root Summer glycyrrhizin low producing strain50.484
DRR006524Root Summer glycyrrhizin low producing strain50.246
DRR006525Leaf Summer glycyrrhizin high producing strain29.744
DRR006526Leaf Summer glycyrrhizin high producing strain29.535

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.319
SRR2868004Drought Stress(Tissue:root)42.264
SRR2967015Control (Tissue:root)41.935

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.993
SRR9715740Leave36.485
SRR9715741Leave31.357
SRR9715739Root29.868
SRR9715742Root27.835
SRR9715743Root27.072

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.180
SRR8749028MeJA induced 9h27.023
SRR8749029MeJA induced 9h21.257
SRR8749030Uninduced15.194
SRR8749031Uninduced9.089
SRR8749032Uninduced8.742

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.206
SRR8400027Control-Root47.341

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved