Gene detail information of Glyur000757s00023973.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G21175.21.00E-58ZIM-like 1
NRXP_003522771.10PREDICTED: GATA transcription factor 24-like isoformX1 [Glycine max]
Swissprottr|Q8GXL7|GAT24_ARATH1.00E-71GATA transcription factor 24
trEMBLtr|I1JV87|I1JV87_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G10340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007577603980945+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000757s00023973.1PF06200.9tify56862.70E-09
Glyur000757s00023973.1PF06203.9CCT1201626.40E-16
Glyur000757s00023973.1PF00320.22GATA1912271.10E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.869
SRR1783600control18.787
SRR1783602moderate drought stress19.228
SRR1811619moderate drought stress19.542

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.931
DRR006520Root Summer glycyrrhizin high producing strain22.626
DRR006521Root Winter glycyrrhizin high producing strain26.886
DRR006522Root Winter glycyrrhizin high producing strain26.416
DRR006523Root Summer glycyrrhizin low producing strain34.083
DRR006524Root Summer glycyrrhizin low producing strain33.140
DRR006525Leaf Summer glycyrrhizin high producing strain16.544
DRR006526Leaf Summer glycyrrhizin high producing strain16.304

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)31.417
SRR2868004Drought Stress(Tissue:root)39.680
SRR2967015Control (Tissue:root)39.953

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.790
SRR9715740Leave28.873
SRR9715741Leave29.348
SRR9715739Root9.308
SRR9715742Root12.672
SRR9715743Root12.564

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.925
SRR8749028MeJA induced 9h19.751
SRR8749029MeJA induced 9h12.331
SRR8749030Uninduced10.707
SRR8749031Uninduced7.957
SRR8749032Uninduced7.909

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.161
SRR8400027Control-Root26.945

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved