Gene detail information of Glyur000757s00023974.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G20960.12.00E-104Cytidine/deoxycytidylate deaminase family protein
NRXP_004508295.10PREDICTED: riboflavin biosynthesis protein RibD-like [Cicer arietinum]
COGYP_007149628.13.00E-77diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cylindrospermum stagnale PCC 7417]
Swissprottr|Q8GWP5|RIBD_ARATH6.00E-141Inactive 5-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor)
trEMBLtr|I1JK94|I1JK94_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G01270.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007578227685462+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11752ribD EC:3.5.4.26 1.1.1.193 Riboflavin metabolism map00740
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0008270  zinc ion binding

GO:0008835  diaminohydroxyphosphoribosylaminopyrimidine deaminase activity

GO:0016787  hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000757s00023974.2PF00383.17dCMP_cyt_deam_1721694.50E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.875
SRR1783600control11.790
SRR1783602moderate drought stress10.430
SRR1811619moderate drought stress10.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.020
DRR006520Root Summer glycyrrhizin high producing strain7.669
DRR006521Root Winter glycyrrhizin high producing strain4.621
DRR006522Root Winter glycyrrhizin high producing strain4.523
DRR006523Root Summer glycyrrhizin low producing strain12.627
DRR006524Root Summer glycyrrhizin low producing strain12.603
DRR006525Leaf Summer glycyrrhizin high producing strain11.703
DRR006526Leaf Summer glycyrrhizin high producing strain11.587

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.840
SRR2868004Drought Stress(Tissue:root)22.829
SRR2967015Control (Tissue:root)18.180

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.523
SRR9715740Leave22.854
SRR9715741Leave19.150
SRR9715739Root5.877
SRR9715742Root8.390
SRR9715743Root8.830

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.552
SRR8749028MeJA induced 9h13.971
SRR8749029MeJA induced 9h5.999
SRR8749030Uninduced11.570
SRR8749031Uninduced11.823
SRR8749032Uninduced5.851

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.871
SRR8400027Control-Root13.952

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved