Gene detail information of Glyur000757s00023975.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56700.1 | 3.00E-05 | FBD / Leucine Rich Repeat domains containing protein |
| NR | XP_004504896.1 | 9.76E-139 | PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|A0A072UNA8|A0A072UNA8_MEDTR | 3.00E-136 | F-box/RNI superfamily protein {ECO:0000313|EMBL:KEH31187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00757 | 97848 | 100115 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.818 |
| SRR1783600 | control | 1.624 |
| SRR1783602 | moderate drought stress | 2.330 |
| SRR1811619 | moderate drought stress | 2.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.247 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.022 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.790 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.205 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.542 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.330 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.631 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.051 |
| SRR2967015 | Control (Tissue:root) | 4.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.755 |
| SRR9715740 | Leave | 0.622 |
| SRR9715741 | Leave | 0.654 |
| SRR9715739 | Root | 0.040 |
| SRR9715742 | Root | 0.346 |
| SRR9715743 | Root | 0.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.806 |
| SRR8749028 | MeJA induced 9h | 5.819 |
| SRR8749029 | MeJA induced 9h | 3.250 |
| SRR8749030 | Uninduced | 4.672 |
| SRR8749031 | Uninduced | 4.265 |
| SRR8749032 | Uninduced | 2.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.707 |
| SRR8400027 | Control-Root | 2.436 |