Gene detail information of Glyur000757s00023978.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G04230.1 | 6.00E-11 | FBD, F-box and Leucine Rich Repeat domains containing protein |
| NR | XP_004504897.1 | 5.41E-107 | PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q6NKX3|FDL14_ARATH | 2.00E-11 | F-box/FBD/LRR-repeat protein At2g04230 |
| trEMBL | tr|A0A072UNA8|A0A072UNA8_MEDTR | 9.00E-79 | F-box/RNI superfamily protein {ECO:0000313|EMBL:KEH31187.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00757 | 109417 | 114660 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000757s00023978.1 | PF00646.28 | F-box | 30 | 68 | 2.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.279 |
| SRR1783600 | control | 0.419 |
| SRR1783602 | moderate drought stress | 0.989 |
| SRR1811619 | moderate drought stress | 0.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.748 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.683 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.430 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.442 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.372 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.622 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.000 |
| SRR2967015 | Control (Tissue:root) | 2.483 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.102 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.069 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.970 |
| SRR8749028 | MeJA induced 9h | 2.359 |
| SRR8749029 | MeJA induced 9h | 0.886 |
| SRR8749030 | Uninduced | 0.861 |
| SRR8749031 | Uninduced | 1.160 |
| SRR8749032 | Uninduced | 0.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.435 |
| SRR8400027 | Control-Root | 0.320 |