Gene detail information of Glyur000761s00025810.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G45900.10ThiF family protein
NRKEH17667.10ubiquitin-like modifier-activating enzyme ATG7 [Medicago truncatula]
COGYP_003649245.12.00E-09UBA/THIF-type NAD/FAD binding protein [Thermosphaera aggregans DSM 11486]
Swissprottr|Q94CD5|ATG7_ARATH0Ubiquitin-like modifier-activating enzyme atg7
trEMBLtr|A0A072TJQ4|A0A072TJQ4_MEDTR0Ubiquitin-like modifier-activating enzyme ATG7 {ECO:0000313|EMBL:KEH17667.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007615384659025-


Gene family

Gene familysubfamily
Ubiquitin FamilyThiF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006914  autophagy


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0008641  small protein activating enzyme activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000761s00025810.1PF00899.16ThiF3394901.80E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.417
SRR1783600control9.486
SRR1783602moderate drought stress7.928
SRR1811619moderate drought stress8.184

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.517
DRR006520Root Summer glycyrrhizin high producing strain8.335
DRR006521Root Winter glycyrrhizin high producing strain6.069
DRR006522Root Winter glycyrrhizin high producing strain6.072
DRR006523Root Summer glycyrrhizin low producing strain7.962
DRR006524Root Summer glycyrrhizin low producing strain8.137
DRR006525Leaf Summer glycyrrhizin high producing strain6.170
DRR006526Leaf Summer glycyrrhizin high producing strain5.939

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.137
SRR2868004Drought Stress(Tissue:root)19.572
SRR2967015Control (Tissue:root)21.132

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.257
SRR9715740Leave8.251
SRR9715741Leave10.784
SRR9715739Root9.107
SRR9715742Root8.958
SRR9715743Root8.643

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.560
SRR8749028MeJA induced 9h15.918
SRR8749029MeJA induced 9h19.050
SRR8749030Uninduced17.125
SRR8749031Uninduced20.447
SRR8749032Uninduced14.421

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.355
SRR8400027Control-Root19.850

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved