Gene detail information of Glyur000762s00020828.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48440.14.00E-105Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_007137964.10hypothetical protein PHAVU_009G169600g [Phaseolus vulgaris]
Swissprottr|Q9STM4|C3H43_ARATH8.00E-135Zinc finger CCCH domain-containing protein 43
trEMBLtr|V7AZB8|V7AZB8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW09958.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007623462238914-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000762s00020828.1PF00642.19zf-CCCH1621841.30E-07
Glyur000762s00020828.1PF00642.19zf-CCCH2082302.90E-07
Glyur000762s00020828.1PF00642.19zf-CCCH2552775.10E-10
Glyur000762s00020828.1PF00642.19zf-CCCH3884145.90E-07
Glyur000762s00020828.1PF00642.19zf-CCCH4364596.50E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.377
SRR1783600control47.460
SRR1783602moderate drought stress53.618
SRR1811619moderate drought stress53.496

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.653
DRR006520Root Summer glycyrrhizin high producing strain36.685
DRR006521Root Winter glycyrrhizin high producing strain23.306
DRR006522Root Winter glycyrrhizin high producing strain22.893
DRR006523Root Summer glycyrrhizin low producing strain44.480
DRR006524Root Summer glycyrrhizin low producing strain43.993
DRR006525Leaf Summer glycyrrhizin high producing strain18.017
DRR006526Leaf Summer glycyrrhizin high producing strain17.936

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.623
SRR2868004Drought Stress(Tissue:root)34.619
SRR2967015Control (Tissue:root)38.493

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.824
SRR9715740Leave19.624
SRR9715741Leave21.340
SRR9715739Root18.143
SRR9715742Root25.050
SRR9715743Root25.666

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.042
SRR8749028MeJA induced 9h44.459
SRR8749029MeJA induced 9h23.349
SRR8749030Uninduced26.213
SRR8749031Uninduced14.826
SRR8749032Uninduced9.657

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.137
SRR8400027Control-Root52.571

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved