Gene detail information of Glyur000762s00020838.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63180.10Pectin lyase-like superfamily protein
NRKHN34377.10Putative pectate lyase 22 [Glycine soja]
COGYP_003976318.13.00E-22pectate lyase family protein [Achromobacter xylosoxidans A8]
Swissprottr|Q93Z25|PLY22_ARATH0Probable pectate lyase 22 (Precursor)
trEMBLtr|I1K070|I1K070_SOYBN0Pectate lyase {ECO:0000256|RuleBase:RU361123}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00762103918106741+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyPL1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01728pel EC:4.2.2.2 Pentose and glucuronate interconversions map00040
Quorum sensingmap02024


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000762s00020838.1PF00544.14Pec_lyase_C1353231.00E-63


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control183.894
SRR1783600control183.937
SRR1783602moderate drought stress29.803
SRR1811619moderate drought stress29.678

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.795
DRR006520Root Summer glycyrrhizin high producing strain34.130
DRR006521Root Winter glycyrrhizin high producing strain0.108
DRR006522Root Winter glycyrrhizin high producing strain0.140
DRR006523Root Summer glycyrrhizin low producing strain16.488
DRR006524Root Summer glycyrrhizin low producing strain16.494
DRR006525Leaf Summer glycyrrhizin high producing strain12.646
DRR006526Leaf Summer glycyrrhizin high producing strain12.423

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)100.275
SRR2868004Drought Stress(Tissue:root)46.535
SRR2967015Control (Tissue:root)58.217

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.063
SRR9715740Leave1.026
SRR9715741Leave1.418
SRR9715739Root48.343
SRR9715742Root36.580
SRR9715743Root42.334

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.552
SRR8749028MeJA induced 9h0.043
SRR8749029MeJA induced 9h0.334
SRR8749030Uninduced0.165
SRR8749031Uninduced0.000
SRR8749032Uninduced0.055

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root432.602
SRR8400027Control-Root373.432

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved