Gene detail information of Glyur000763s00023755.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23670.20long chain base2
NRKHN00617.10Serine palmitoyltransferase 2 [Glycine soja]
COGYP_721697.14.00E-668-amino-7-oxononanoate synthase [Trichodesmium erythraeum IMS101]
Swissprottr|Q2R3K3|LCB2A_ORYSJ0Long chain base biosynthesis protein 2a
trEMBLtr|A0A072U8D8|A0A072U8D8_MEDTR0Long chain base biosynthesis 2a-like protein {ECO:0000313|EMBL:KEH25646.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007639127497308+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00654SPT EC:2.3.1.50 Sphingolipid metabolism map00600
Sphingolipid signaling pathwaymap04071
Autophagy - yeastmap04138


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016740  transferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000763s00023755.1PF00155.16Aminotran_1_21324734.00E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.096
SRR1783600control30.764
SRR1783602moderate drought stress33.844
SRR1811619moderate drought stress33.603

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.959
DRR006520Root Summer glycyrrhizin high producing strain46.441
DRR006521Root Winter glycyrrhizin high producing strain83.312
DRR006522Root Winter glycyrrhizin high producing strain80.088
DRR006523Root Summer glycyrrhizin low producing strain55.060
DRR006524Root Summer glycyrrhizin low producing strain54.504
DRR006525Leaf Summer glycyrrhizin high producing strain34.154
DRR006526Leaf Summer glycyrrhizin high producing strain34.505

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.797
SRR2868004Drought Stress(Tissue:root)65.981
SRR2967015Control (Tissue:root)61.302

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.584
SRR9715740Leave45.325
SRR9715741Leave56.302
SRR9715739Root27.233
SRR9715742Root41.851
SRR9715743Root40.863

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.368
SRR8749028MeJA induced 9h70.504
SRR8749029MeJA induced 9h34.230
SRR8749030Uninduced47.652
SRR8749031Uninduced82.413
SRR8749032Uninduced32.863

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root53.653
SRR8400027Control-Root50.457

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved