Gene detail information of Glyur000764s00026017.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62150.10P-glycoprotein 21
NRXP_006577182.10PREDICTED: ABC transporter B family member 4-like isoform X4 [Glycine max]
COGYP_629357.13.00E-109ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprottr|O80725|AB4B_ARATH0ABC transporter B family member 4
trEMBLtr|I1JQW9|I1JQW9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38300.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007641922024759+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000764s00026017.1PF00664.18ABC_membrane663321.50E-47
Glyur000764s00026017.1PF00005.22ABC_tran3985463.10E-34
Glyur000764s00026017.1PF00664.18ABC_membrane7129834.40E-49
Glyur000764s00026017.1PF00005.22ABC_tran102711779.00E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.118
SRR1783600control0.196
SRR1783602moderate drought stress0.540
SRR1811619moderate drought stress0.518

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.439
DRR006520Root Summer glycyrrhizin high producing strain0.461
DRR006521Root Winter glycyrrhizin high producing strain0.846
DRR006522Root Winter glycyrrhizin high producing strain0.979
DRR006523Root Summer glycyrrhizin low producing strain0.289
DRR006524Root Summer glycyrrhizin low producing strain0.323
DRR006525Leaf Summer glycyrrhizin high producing strain0.356
DRR006526Leaf Summer glycyrrhizin high producing strain0.378

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.800
SRR2868004Drought Stress(Tissue:root)1.158
SRR2967015Control (Tissue:root)0.874

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.388
SRR9715740Leave0.157
SRR9715741Leave0.395
SRR9715739Root0.013
SRR9715742Root0.236
SRR9715743Root0.072

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.821
SRR8749028MeJA induced 9h18.248
SRR8749029MeJA induced 9h14.104
SRR8749030Uninduced26.891
SRR8749031Uninduced65.746
SRR8749032Uninduced51.739

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.132
SRR8400027Control-Root1.807

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved