Gene detail information of Glyur000764s00026020.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G62120.20Class II aaRS and biotin synthetases superfamily protein
NRXP_003554576.10PREDICTED: bifunctional glutamate/proline--tRNA ligase-like [Glycine max]
COGYP_003825625.19.00E-155prolyl-tRNA synthetase [Thermosediminibacter oceani DSM 16646]
trEMBLtr|I1NBI4|I1NBI4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G40930.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007643590741634+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01881PARS, proS EC:6.1.1.15 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006433  prolyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004827  proline-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000764s00026020.1PF00587.20tRNA-synt_2b712121.60E-17
Glyur000764s00026020.1PF03129.15HGTP_anticodon3144108.70E-19
Glyur000764s00026020.1PF09180.6ProRS-C_14375105.20E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.693
SRR1783600control42.860
SRR1783602moderate drought stress46.991
SRR1811619moderate drought stress46.510

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain76.158
DRR006520Root Summer glycyrrhizin high producing strain75.906
DRR006521Root Winter glycyrrhizin high producing strain61.276
DRR006522Root Winter glycyrrhizin high producing strain59.620
DRR006523Root Summer glycyrrhizin low producing strain83.643
DRR006524Root Summer glycyrrhizin low producing strain83.299
DRR006525Leaf Summer glycyrrhizin high producing strain26.710
DRR006526Leaf Summer glycyrrhizin high producing strain26.361

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)159.485
SRR2868004Drought Stress(Tissue:root)124.187
SRR2967015Control (Tissue:root)134.539

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.406
SRR9715740Leave46.367
SRR9715741Leave47.761
SRR9715739Root31.653
SRR9715742Root67.791
SRR9715743Root65.159

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h139.759
SRR8749028MeJA induced 9h115.696
SRR8749029MeJA induced 9h111.609
SRR8749030Uninduced61.963
SRR8749031Uninduced51.235
SRR8749032Uninduced57.300

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root121.089
SRR8400027Control-Root114.973

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved