Gene detail

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Gene detail information of Glyur000764s00026021.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62110.1	0	Pectin lyase-like superfamily protein
NR	KEH24447.1	0	polygalacturonase/glycoside hydrolase family protein [Medicago truncatula]
COG	YP_001179193.1	9.00E-65	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	8.00E-158	Probable polygalacturonase
trEMBL	tr\|A0A072U423\|A0A072U423_MEDTR	0	Polygalacturonase/glycoside hydrolase family protein {ECO:0000313\|EMBL:KEH24447.1}

Sequence

Transcript Sequence

>Glyur000764s00026021.1
CAATTTAAAAAATGAAACAACATTTAGATATTTAACAACTTTTCAATGTTTTATTATTATGTGTTGTCGACTTACCTTAAGAAAAACAGAGAACAAATGATTAGTAGTAGTCAAGGTTTTAAATTGCATTCTCAATTTCAGTCATGGTTAATCATAATTCATGGTGGTAATAGTAGTAGTAACAACATAAGGGGTTAAAGATAAATAAATAAATATAGAAGATATGATTGTGAATCTTGACTTGATGGTGCTTATGAACTAGAAATTGGGNTTGGGGAGTGGAGGAGGATCAAAATATTGTCATTTGTCACAAGCCACACACAACACATATTCACTGATGTTAAATAGTGAAGCTCCTTCTGATTCNCCATGCAAAACTAAAATTATATGAGCAGAGCAAAAGCTCTTTCTCACCTCCTTAACCTTAGCAGTTGGCACTGTCTGCTGAAGTTGTCCGTGTCTCTGTGTTGGAAGTCACTGTCTCCACTTTAACAACAGACTCGGTGACAAAACTCAAAATTCAGAGATCACTCTTGTGCCAACCGAGTTTATCACCAGTCCCATCTTCAAAAATAATTTATTTGAGAGTTTCTCTTTCTTTTCACCCTTGGTAGCTTTCTGGGAACTTTTCCATACCCAGAGAGAGAAAGTGTGTGTTTGGAGGAAGAGTGAAGAGACATAGTGAAGGAGTTTGAAGAAGCAGAAGGGGGTCCTACTGCTTATATTTTTGTGGGCAATAACAGNCCCTGTCAATGATTTTTACTTGGGTGGTGGTGACTCTATCAATGACCCACCCAATCAATATCACACTTGCTTATTGCTGGGGATTTTAATCAATGAACCAAACCTCCTTCTCTTCTCCTTCACCTTTGCTCCTTTCATCATCCTATTTTTTGTCTCTGGGTCTTCTTCATNACTAGGAGGACTTGGAATTGGTGGTGGCTCAAAAAGGGAAAGGTGGATCTCAGTCATATGAGGAGACCTTCAACACTCGTGGATGTGCTTCTGGTACTTGCATTGTTCTGTTGTGGCCCATGGACAGTGTGGAGCAGCACACTTTGCAAAAGGACAAACTTGGGCGAAGTTCGACCTCACAGTGTCAGCATTACTGAATTTGGTGCTGTTGGGGATGGGATCACTCTCAACACAAAAGCGTTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCGGCAGGCCGGTGGTTAACTGGTAGCTTTGATCTCATTAGCCACCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCCGAGGATTGGCCACTTGTTGATCCTCTACCATCTTATGGGCGAGGAAGGGAGTTGCCGGGTGGAAGGCATAGGAGCCTCATATATGGATGCAATTTGACTGATGTTATCATAACAGGTAACAATGGAACCATTGATGGTCAAGGGAGTATCTGGTGGAGCAAGTTTAGGGACAAAACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACNGGGATTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTCTGGACTATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCACAATCCTGGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGACTCTTCTGATGATGTGTGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGAATCGCGTTCGGTCGTCCCAGCACAAACATTGTCCTCCACAGGCTGGTTGGGAAAACTGAAACAAGTGCAGGGATTGCTATTGGGAGTGAGATGTCTGGTGGTGTGTCAGAAGTTCATGCAGAAGATATTCACTTTTACGATTCATATACAGCAATCAGAATAAAGACTTCTNCTGGCCGGGGTGGCTATGTTAGAAACATCTATATCTCTAACATGACCTTGGCTAATGTTGACATTGCTATTAGGTTCTCTGGTTTATATGGGGATCATCCAGATGATGCTTATGACCCAAATGCTCTACCTGTGATAGAAAAGGTTACAATCAAGGATGTGATAGGAGAAAATATCAAAAGGGCAGGTCTCATAGAGGGTATAGAGGGTGACAATTTTGACAACATCTGCTTATTAAACATCACACTTAATGTGAGCTCAAGCTTTCCATGGAACTGCTCTTACATTAGAGGATACTCTGACATGGTTCTGCCAGAAGCTTGTGAGCCTCTCAAGGAGAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTGTCGAATCACCGGCAAATTTCTAGTAATCAAAACAGAGGTGCTTGGTTTCTGTCTTGGTAAATTGTGGACTTTATAGCATTATCCTACCNAAGCTCACTCATAGCTGAAATTTGATTGGTGCGTTTTTTCAGCAGGACAAATTTCAGGTGACATAAGAAGTTGAGTGGAGTTGCTGATCTGTGATTGTCCATCNGCAGAAAGATACTGAGAGATTATTGTTTTCTTGTAACTTGTGTGCAGCAACAAATAATTTGAGTGATTTATCAGAAATAGGAAGTTGAATGAATTCATGTCTTGCTTTTCTAGCTACCTATGGCTTTGGAAAAGGAAAAAAAAAAATGAAAATTTTGTGTCTCCATTGATTCTAAGGGAAAGAGTGTGTTTGTTGCAATGTTGCTAGAGCTGAGATTTGGTTACTCTGACATAATTCCCTTTTGCTACAATGTTGTCGGACATTGGAGATTTTGCAGAAGTTCGAGGTAGGTGCTTCTTTTGTTTGAATAAGGAATCCAATAAACAACTTCCTAGAAAGGTGGAATCTAATCAATTACATTCCTCCTTTTTTTTTTTTACACTTAATAGGTAGAGTTATTATTTGATGGTTTGTTTTCATTCTTCTTTTGGGCTGGTGGTTAGAGGTGGTCAAATAATCTCAGAATCTTGTCTTTCTGGAAAGCAAAATGAGTATATAATAAAGGCATACATTAAACTGGCATAGGAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00764	45108	49221	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000764s00026021.1	PF00295.12	Glyco_hydro_28	145	417	2.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.761
SRR1783600	control	13.861
SRR1783602	moderate drought stress	8.132
SRR1811619	moderate drought stress	8.250

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.640
DRR006520	Root Summer glycyrrhizin high producing strain	17.350
DRR006521	Root Winter glycyrrhizin high producing strain	19.369
DRR006522	Root Winter glycyrrhizin high producing strain	18.805
DRR006523	Root Summer glycyrrhizin low producing strain	17.785
DRR006524	Root Summer glycyrrhizin low producing strain	17.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.991
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.906

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	29.930
SRR2868004	Drought Stress(Tissue:root)	23.585
SRR2967015	Control (Tissue:root)	24.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	10.542
SRR9715740	Leave	11.595
SRR9715741	Leave	9.452
SRR9715739	Root	6.162
SRR9715742	Root	12.240
SRR9715743	Root	10.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.508
SRR8749028	MeJA induced 9h	7.454
SRR8749029	MeJA induced 9h	4.630
SRR8749030	Uninduced	5.287
SRR8749031	Uninduced	3.915
SRR8749032	Uninduced	3.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	31.173
SRR8400027	Control-Root	30.834