Gene detail information of Glyur000764s00026025.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62100.1 | 2.00E-27 | indole-3-acetic acid inducible 30 |
| NR | XP_007145089.1 | 1.77E-63 | hypothetical protein PHAVU_007G208800g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M1R4|IAA30_ARATH | 3.00E-33 | Auxin-responsive protein IAA30 |
| trEMBL | tr|V7BJ85|V7BJ85_PHAVU | 7.00E-64 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00764 | 66787 | 68109 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000764s00026025.1 | PF02309.11 | AUX_IAA | 58 | 157 | 1.80E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.184 |
| SRR1783600 | control | 0.147 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.714 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.229 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.460 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.577 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.338 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.645 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.451 |
| SRR2967015 | Control (Tissue:root) | 0.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.125 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.037 |
| SRR8749028 | MeJA induced 9h | 3.232 |
| SRR8749029 | MeJA induced 9h | 1.450 |
| SRR8749030 | Uninduced | 1.447 |
| SRR8749031 | Uninduced | 0.925 |
| SRR8749032 | Uninduced | 0.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.664 |
| SRR8400027 | Control-Root | 0.405 |