Gene detail information of Glyur000767s00028521.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16210.1 | 3.00E-17 | F-box family protein |
| NR | XP_004514373.1 | 1.77E-105 | PREDICTED: F-box protein CPR30-like [Cicer arietinum] |
| Swissprot | tr|Q9LU24|FB145_ARATH | 2.00E-18 | Putative F-box protein At3g16210 |
| trEMBL | tr|G7K8D2|G7K8D2_MEDTR | 6.00E-100 | F-box protein interaction domain protein {ECO:0000313|EMBL:AES96484.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00767 | 39451 | 44004 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000767s00028521.1 | PF00646.28 | F-box | 43 | 75 | 0.0007 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.912 |
| SRR1783600 | control | 0.934 |
| SRR1783602 | moderate drought stress | 1.839 |
| SRR1811619 | moderate drought stress | 1.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.097 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.661 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.505 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.155 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.669 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.265 |
| SRR2967015 | Control (Tissue:root) | 6.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.059 |
| SRR9715740 | Leave | 0.248 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.282 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.050 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.267 |
| SRR8749028 | MeJA induced 9h | 5.450 |
| SRR8749029 | MeJA induced 9h | 2.838 |
| SRR8749030 | Uninduced | 3.630 |
| SRR8749031 | Uninduced | 3.098 |
| SRR8749032 | Uninduced | 1.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.558 |
| SRR8400027 | Control-Root | 2.561 |