Gene detail information of Glyur000768s00019890.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21060.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003628041.1 | 0 | WD repeat-containing protein [Medicago truncatula] |
| COG | YP_007073260.1 | 1.00E-07 | YD repeat protein [Leptolyngbya sp. PCC 7376] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 1.00E-06 | Protein Mut11 |
| trEMBL | tr|Q1S5M0|Q1S5M0_MEDTR | 0 | Retinoblastoma-binding-like protein {ECO:0000313|EMBL:AET02517.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00768 | 46998 | 52049 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000768s00019890.1 | PF00400.27 | WD40 | 20 | 51 | 0.00039 |
| Glyur000768s00019890.1 | PF00400.27 | WD40 | 67 | 95 | 0.00034 |
| Glyur000768s00019890.1 | PF00400.27 | WD40 | 217 | 243 | 0.024 |
| Glyur000768s00019890.1 | PF00400.27 | WD40 | 328 | 363 | 0.0085 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.884 |
| SRR1783600 | control | 14.867 |
| SRR1783602 | moderate drought stress | 19.723 |
| SRR1811619 | moderate drought stress | 19.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.135 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.336 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.851 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.858 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.827 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.103 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.256 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.665 |
| SRR2967015 | Control (Tissue:root) | 23.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.618 |
| SRR9715740 | Leave | 15.982 |
| SRR9715741 | Leave | 13.932 |
| SRR9715739 | Root | 11.660 |
| SRR9715742 | Root | 13.336 |
| SRR9715743 | Root | 14.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.823 |
| SRR8749028 | MeJA induced 9h | 13.976 |
| SRR8749029 | MeJA induced 9h | 13.810 |
| SRR8749030 | Uninduced | 7.117 |
| SRR8749031 | Uninduced | 3.295 |
| SRR8749032 | Uninduced | 4.886 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.047 |
| SRR8400027 | Control-Root | 18.479 |