Gene detail information of Glyur000768s00019897.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04895.10DEA(D/H)-box RNA helicase family protein
NRXP_004511172.10PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cicer arietinum]
COGYP_545321.12.00E-86ATP-dependent helicase HrpA [Methylobacillus flagellatus KT]
Swissprottr|P0CE10|Y4102_ARATH9.00E-60Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBLtr|I1KVZ2|I1KVZ2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G24630.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007688479596073+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000768s00019897.1PF00270.24DEAD2584082.10E-05
Glyur000768s00019897.1PF00271.26Helicase_C5616491.20E-09
Glyur000768s00019897.1PF04408.18HA27128032.40E-23
Glyur000768s00019897.1PF07717.11OB_NTP_bind8409506.50E-15
Glyur000768s00019897.1PF00035.20dsrm105011123.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.564
SRR1783600control6.579
SRR1783602moderate drought stress7.718
SRR1811619moderate drought stress7.659

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.003
DRR006520Root Summer glycyrrhizin high producing strain8.002
DRR006521Root Winter glycyrrhizin high producing strain8.212
DRR006522Root Winter glycyrrhizin high producing strain7.950
DRR006523Root Summer glycyrrhizin low producing strain5.183
DRR006524Root Summer glycyrrhizin low producing strain5.311
DRR006525Leaf Summer glycyrrhizin high producing strain5.938
DRR006526Leaf Summer glycyrrhizin high producing strain5.846

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.216
SRR2868004Drought Stress(Tissue:root)9.031
SRR2967015Control (Tissue:root)9.812

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.707
SRR9715740Leave6.342
SRR9715741Leave6.487
SRR9715739Root1.045
SRR9715742Root9.056
SRR9715743Root6.737

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.274
SRR8749028MeJA induced 9h6.603
SRR8749029MeJA induced 9h4.818
SRR8749030Uninduced1.785
SRR8749031Uninduced0.489
SRR8749032Uninduced1.105

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.113
SRR8400027Control-Root11.399

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved