Gene detail information of Glyur000768s00019898.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04900.14.00E-131NYC1-like
NRKEH19223.10chlorophyll(ide) B reductase, putative [Medicago truncatula]
COGNP_662034.13.00E-41short chain dehydrogenase/reductase oxidoreductase [Chlorobium tepidum TLS]
Swissprottr|Q8LEU3|NOL_ARATH1.00E-165Chlorophyll(ide) b reductase NOL, chloroplastic (Precursor)
trEMBLtr|A0A072TQT8|A0A072TQT8_MEDTR0Chlorophyll(Ide) B reductase, putative {ECO:0000313|EMBL:KEH19223.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0076897054104245+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13606NOL, NYC1 EC:1.1.1.294 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000768s00019898.2PF00106.20adh_short882321.40E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.245
SRR1783600control16.684
SRR1783602moderate drought stress24.206
SRR1811619moderate drought stress23.693

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.016
DRR006520Root Summer glycyrrhizin high producing strain8.825
DRR006521Root Winter glycyrrhizin high producing strain8.630
DRR006522Root Winter glycyrrhizin high producing strain8.836
DRR006523Root Summer glycyrrhizin low producing strain12.683
DRR006524Root Summer glycyrrhizin low producing strain11.912
DRR006525Leaf Summer glycyrrhizin high producing strain30.355
DRR006526Leaf Summer glycyrrhizin high producing strain30.451

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.430
SRR2868004Drought Stress(Tissue:root)9.286
SRR2967015Control (Tissue:root)11.125

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.112
SRR9715740Leave15.440
SRR9715741Leave13.453
SRR9715739Root2.726
SRR9715742Root4.098
SRR9715743Root3.842

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.770
SRR8749028MeJA induced 9h7.508
SRR8749029MeJA induced 9h6.615
SRR8749030Uninduced15.486
SRR8749031Uninduced7.399
SRR8749032Uninduced9.980

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.985
SRR8400027Control-Root15.311

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved