Gene detail

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Gene detail information of Glyur000768s00019899.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03770.2	2.00E-85	Leucine-rich repeat protein kinase family protein
NR	XP_004511169.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like isoform X1 [Cicer arietinum]
COG	YP_004775215.1	3.00E-24	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	2.00E-138	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|I1KVZ0\|I1KVZ0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G24610.1}

Sequence

Transcript Sequence

>Glyur000768s00019899.1
GGAGATAAGAGGGCAATGGATGCCAAACCAAAGCAAGCAAAATTTCAGNGAGATACACAACAAGAGAGTGCACCTTTTTATAGAATATATAAAATTGATTGACATTAAAGAACTTGCGTGTTGTCATAAGCACTGCCAAACTAACAGAAAAGCATGCATAAAGATATTAACGAAAAGCATATTGCAAAAATGGGTAAAAGCTGGAATGTGATATGTGGTCCACTGTAAAATGTTTTGGTTTTTCAGTGCCTAGTGGCTATAGTGCTTGTAATGTAATCTCATCTCATCAATACTTACAAAATTTATGTATGCATGAGAAAGAGCTAAAGAGTGAAAAGATNGTTAGTTCATCTTGTATTGAATGAATGGCAGAGGCTGCAGCTTGGTCCTAGAAGAAGCCTTTAGTGATCAAAACCTCTTGTGAATTTACTACTTATCCAAGGCTCTATCTTTCTCTCCATTGGAAGAGAAGATGGCAAAACCAGTTTCCCATTCACAACATCATCTACTTCTTTTAATGATGGTGTTTCTTTCCATCCATCTCTCAGAGGAGTTGCAATTTTCTCAGTACCAGACACTTCTCAAAGTTCAGAAACTTCTTGGCTACCCATCAGCACTAGGAAGCTTCTTCAGCAGCAGCAGCAGCACAGATTTCTGCAACATTGAACCTACCCCATCTTTGACACTAGTGTGCTATGAAGAAAATTTGACACAGCTGCATGTTGTTGGTGGCAATAACAACAATGAGTTTACCCCATTGCCTCAAAACTTCTCCTCAGACACTCTATTTGCCACACTAGCCAGTTTACCAAGCTTGAAAGTCCTCTCTTTGGTTTCTATGGGATTATGGGGTCCTCTACCTGAAAGCATTGAGCAATTGTCTTCACTGGAAATACTTAACATTAGTTCAAATTACTTCAGTGGAGCCATCCCAGTTCAGCTTTCACATCTTAAGAACCTTCAGTCAGTGGTACTTGATGATAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGTTCTCTTCAAGGTTTGGCNGTGCTTAGTATGAGGAAAAATTGGCTTAGTGGGAGCTTGCCAACTACAGTGAATGCCCTTGTTACTCTGAGAGTATTAGATCTATCAAATAATCAGCTATCTGGGGAACTACCTCATCTTCACAACTTGGCAAACCTTCAAGTTCTTCACTTGGAAAACAACACATTTGGACCTCATTTCCCTTCTTTGCCCACCAAGTTGGTTTCCCTTGTGCTTAGAAACAACAGCTTCAGGCTTGGTATCCCTTCTAATATAAGCTCTTTCTATCAGCTCCAGAAGCTGGACCTTTCATTCAATGGTTTTGTAGGGCCATTTCCACAATCCTTATTGTCACTTCCTTCCATCAATTACCTTGATATCTCTTCAAATAAGCTCACTGGGATGCTTTTCAAGAATTTTTCATGCAATGAGGATCTCCACTTTGTAGATTTATCCTCAAATCTTTTGAAAGGGGAAATCCCCACTTGTTTGAGGCCAAAGACCAGGGTTGTTTTGTATGCTNGAAACTGTTTATCAAATGATAACAAAGATCAAAACCCTTCCAATTTCTGCAGCAATGAGGCTTTGGCAGTGAATATCATACCCCATCAAGAGAAGCACAAGAGAACAACAACCAGTAAAGAAGTACTTGCATCAAGTATGGGAGTTGCTGGGGTACTGATTGTTGGAGTGGTTATCTTGGTCATTAACCAGGTTCATAAAAAACAGGTTGTGAAAACAACTTCAATGTCCACATTGGAGCATGTTGTTATCANTGAGATACACAATGAAGATAATGTGAAAACTCCTACAAGGTCCATGAATATGATTGAGCATGTCATCAGAAGGGTTCCTGACAANCATGCTGTATATGCACTTACAAGATCCATAAGGGAGCATGTCATGAGCAGAGTTAATAACAAACATCTTGNGAGGACACCTACAAGGTCCATAATAGAACATGTATCATCAACAAACACTGCAAAGCTACTCACTGATGCAAGATGTATATCTCAAACGATGAAGATGGGAACCAGCCATCCTGCTTATAGGACCTTTGCTTTGGACGAACTTAAGGAAGCTACAAATAATTTTGATGCATCAAGTTTCATAAGTGAAGGTCCACATGGTCAGATATATAAAGGGGTGCTCTCTGATGGGATGCATATTGCTATTAGAGGATCTACTGGGGAAAAGCTTTCTTGGACACAGAGAATAGCAGCAGCAATTGGAGTGGTCAAAGGCATTCAGTTCTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTCAAGATAACAGATATTCTTTTGGATAACAATCATAATGTTAAAATAAGCAGTTATAATCTCCCACTCTATNCTGAAAACAAAAGAATGGTCAGTAATGGAACTTCCTCTGGATTAAAAGGAAATCTCCAAGCAAGGANAAAGGATGCAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGAACATTAAAAGATCTTTTTGCAGTACAAGTTCAGAATACATGGAAAAGAGACTCAAATGATCATAGAGACTCGCCTATATCATCCTCCAGGGAGACATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00768	107212	112565	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000768s00019899.1	PF13855.1	LRR_8	113	173	1.10E-06
Glyur000768s00019899.1	PF12799.2	LRR_4	210	243	2.00E-07
Glyur000768s00019899.1	PF00560.28	LRR_1	278	298	1
Glyur000768s00019899.1	PF00069.20	Pkinase	577	711	5.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.597
SRR1783600	control	61.954
SRR1783602	moderate drought stress	37.324
SRR1811619	moderate drought stress	37.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.859
DRR006520	Root Summer glycyrrhizin high producing strain	45.189
DRR006521	Root Winter glycyrrhizin high producing strain	12.650
DRR006522	Root Winter glycyrrhizin high producing strain	12.448
DRR006523	Root Summer glycyrrhizin low producing strain	66.375
DRR006524	Root Summer glycyrrhizin low producing strain	66.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.900

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	21.212
SRR2868004	Drought Stress(Tissue:root)	10.737
SRR2967015	Control (Tissue:root)	16.233

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.732
SRR9715740	Leave	0.238
SRR9715741	Leave	1.210
SRR9715739	Root	3.376
SRR9715742	Root	29.191
SRR9715743	Root	24.471

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.019
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	69.457
SRR8400027	Control-Root	87.858