Gene detail information of Glyur000768s00019902.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39660.2 | 4.00E-50 | cycling DOF factor 2 |
| NR | XP_003628145.1 | 0 | Dof zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q93ZL5|CDF2_ARATH | 6.00E-59 | Cyclic dof factor 2 |
| trEMBL | tr|G8A1Q8|G8A1Q8_MEDTR | 0 | Dof zinc finger protein {ECO:0000313|EMBL:AES85396.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00768 | 116010 | 119035 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000768s00019902.1 | PF02701.10 | zf-Dof | 123 | 182 | 2.70E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.659 |
| SRR1783600 | control | 4.682 |
| SRR1783602 | moderate drought stress | 4.418 |
| SRR1811619 | moderate drought stress | 4.333 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.764 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.539 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.856 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.871 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.767 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.717 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.620 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.310 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.029 |
| SRR2967015 | Control (Tissue:root) | 5.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.018 |
| SRR9715740 | Leave | 1.684 |
| SRR9715741 | Leave | 1.502 |
| SRR9715739 | Root | 1.031 |
| SRR9715742 | Root | 2.337 |
| SRR9715743 | Root | 2.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.800 |
| SRR8749028 | MeJA induced 9h | 2.371 |
| SRR8749029 | MeJA induced 9h | 0.730 |
| SRR8749030 | Uninduced | 0.295 |
| SRR8749031 | Uninduced | 0.195 |
| SRR8749032 | Uninduced | 0.428 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.320 |
| SRR8400027 | Control-Root | 7.115 |