Gene detail information of Glyur000769s00037466.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G40650.13.00E-131succinate dehydrogenase 2-2
NRXP_004488937.10PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Cicer arietinum]
COGYP_742174.11.00E-114succinate dehydrogenase iron-sulfur subunit [Alkalilimnicola ehrlichii MLHE-1]
Swissprottr|Q8LB02|SDHB2_ARATH2.00E-165Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (Precursor)
trEMBLtr|T2DNK1|T2DNK1_PHAVU0Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial {ECO:0000256|RuleBase:RU361237}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007696757472917+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00235SDHB, SDH2 EC:1.3.5.1 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Oxidative phosphorylationmap00190
Alzheimer's diseasemap05010
Parkinson's diseasemap05012
Huntington's diseasemap05016
Non-alcoholic fatty liver disease (NAFLD)map04932


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0055114  oxidation-reduction process


molecular_function

GO:0009055  electron carrier activity

GO:0016491  oxidoreductase activity

GO:0051536  iron-sulfur cluster binding

GO:0051537  2 iron, 2 sulfur cluster binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000769s00037466.1PF13085.1Fer2_3501552.40E-31
Glyur000769s00037466.1PF13534.1Fer4_171922651.80E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control116.114
SRR1783600control119.901
SRR1783602moderate drought stress84.664
SRR1811619moderate drought stress90.151

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain87.538
DRR006520Root Summer glycyrrhizin high producing strain87.217
DRR006521Root Winter glycyrrhizin high producing strain96.820
DRR006522Root Winter glycyrrhizin high producing strain93.818
DRR006523Root Summer glycyrrhizin low producing strain73.487
DRR006524Root Summer glycyrrhizin low producing strain74.067
DRR006525Leaf Summer glycyrrhizin high producing strain86.704
DRR006526Leaf Summer glycyrrhizin high producing strain86.739

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)133.160
SRR2868004Drought Stress(Tissue:root)102.649
SRR2967015Control (Tissue:root)94.842

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave98.863
SRR9715740Leave97.364
SRR9715741Leave97.829
SRR9715739Root90.747
SRR9715742Root92.093
SRR9715743Root92.023

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h168.835
SRR8749028MeJA induced 9h112.322
SRR8749029MeJA induced 9h215.614
SRR8749030Uninduced161.701
SRR8749031Uninduced164.904
SRR8749032Uninduced208.123

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root93.909
SRR8400027Control-Root94.094

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved