Gene detail information of Glyur000770s00019670.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13090.14.00E-98xyloglucan endotransglucosylase/hydrolase 2
NRXP_004516314.12.83E-163PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 2-like [Cicer arietinum]
COGYP_008736035.12.00E-07glycoside hydrolase family protein [Actinoplanes friuliensis DSM 7358]
Swissprottr|Q9SV60|XTH2_ARATH6.00E-123Xyloglucan endotransglucosylase/hydrolase protein 2 (Precursor)
trEMBLtr|A0A072TLU4|A0A072TLU4_MEDTR5.00E-155Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007703426936746-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000770s00019670.1PF00722.16Glyco_hydro_16292169.90E-53
Glyur000770s00019670.1PF06955.7XET_C2422911.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.082
SRR1783600control0.082
SRR1783602moderate drought stress0.310
SRR1811619moderate drought stress0.344

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.937
DRR006520Root Summer glycyrrhizin high producing strain3.131
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain3.614
DRR006524Root Summer glycyrrhizin low producing strain3.262
DRR006525Leaf Summer glycyrrhizin high producing strain0.589
DRR006526Leaf Summer glycyrrhizin high producing strain0.735

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.983
SRR2868004Drought Stress(Tissue:root)0.635
SRR2967015Control (Tissue:root)0.166

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.301
SRR9715740Leave0.000
SRR9715741Leave0.073
SRR9715739Root0.056
SRR9715742Root0.207
SRR9715743Root0.463

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.018
SRR8749028MeJA induced 9h0.253
SRR8749029MeJA induced 9h0.186
SRR8749030Uninduced1.277
SRR8749031Uninduced4.140
SRR8749032Uninduced0.615

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.257
SRR8400027Control-Root0.405

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved