Gene detail information of Glyur000770s00019676.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G25030.22.00E-23RING/U-box superfamily protein
NRXP_004516309.19.89E-63PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cicer arietinum]
trEMBLtr|I1MME7|I1MME7_SOYBN2.00E-60Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G15380.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007707298173793+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000770s00019676.1PF13920.1zf-C3HC4_32212631.20E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.305
SRR1783600control9.706
SRR1783602moderate drought stress8.062
SRR1811619moderate drought stress7.895

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.993
DRR006520Root Summer glycyrrhizin high producing strain34.936
DRR006521Root Winter glycyrrhizin high producing strain5.136
DRR006522Root Winter glycyrrhizin high producing strain4.807
DRR006523Root Summer glycyrrhizin low producing strain12.760
DRR006524Root Summer glycyrrhizin low producing strain13.312
DRR006525Leaf Summer glycyrrhizin high producing strain20.187
DRR006526Leaf Summer glycyrrhizin high producing strain22.698

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.023
SRR2868004Drought Stress(Tissue:root)12.135
SRR2967015Control (Tissue:root)20.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.244
SRR9715740Leave15.710
SRR9715741Leave11.827
SRR9715739Root22.796
SRR9715742Root46.655
SRR9715743Root37.613

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.488
SRR8749028MeJA induced 9h16.142
SRR8749029MeJA induced 9h17.946
SRR8749030Uninduced19.912
SRR8749031Uninduced7.433
SRR8749032Uninduced15.041

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.498
SRR8400027Control-Root24.788

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved