Gene detail information of Glyur000770s00019677.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G79810.12.00E-137Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein
NRXP_004516308.10PREDICTED: peroxisome biogenesis protein 2-like [Cicer arietinum]
Swissprottr|Q9CA86|PEX2_ARATH9.00E-179Peroxisome biogenesis protein 2
trEMBLtr|G7LFV7|G7LFV7_MEDTR0Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:AET01453.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007707539278714-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000770s00019677.1PF04757.9Pex2_Pex12442503.10E-41
Glyur000770s00019677.1PF00097.20zf-C3HC42703106.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.385
SRR1783600control14.902
SRR1783602moderate drought stress14.877
SRR1811619moderate drought stress14.445

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.652
DRR006520Root Summer glycyrrhizin high producing strain16.286
DRR006521Root Winter glycyrrhizin high producing strain42.831
DRR006522Root Winter glycyrrhizin high producing strain40.577
DRR006523Root Summer glycyrrhizin low producing strain16.665
DRR006524Root Summer glycyrrhizin low producing strain16.856
DRR006525Leaf Summer glycyrrhizin high producing strain21.696
DRR006526Leaf Summer glycyrrhizin high producing strain21.292

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.247
SRR2868004Drought Stress(Tissue:root)26.355
SRR2967015Control (Tissue:root)25.390

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.495
SRR9715740Leave34.052
SRR9715741Leave40.498
SRR9715739Root15.265
SRR9715742Root18.716
SRR9715743Root17.189

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.881
SRR8749028MeJA induced 9h26.445
SRR8749029MeJA induced 9h21.036
SRR8749030Uninduced25.198
SRR8749031Uninduced10.736
SRR8749032Uninduced13.312

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.101
SRR8400027Control-Root20.602

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved