Gene detail information of Glyur000771s00029724.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G58440.10FAD/NAD(P)-binding oxidoreductase family protein
NRXP_004501491.10PREDICTED: squalene monooxygenase-like isoform X1 [Cicer arietinum]
COGYP_004346032.12.00E-101Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|I1K897|I1K897_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G05200.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007716711771078-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00511SQLE, ERG1 EC:1.14.14.17 Steroid biosynthesis map00100
Sesquiterpenoid and triterpenoid biosynthesismap00909


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004506  squalene monooxygenase activity

GO:0016491  oxidoreductase activity

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000771s00029724.1PF13450.1NAD_binding_864903.00E-05
Glyur000771s00029724.1PF08491.5SE2124831.00E-123


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.378
SRR1783600control18.406
SRR1783602moderate drought stress17.783
SRR1811619moderate drought stress17.412

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.391
DRR006520Root Summer glycyrrhizin high producing strain15.764
DRR006521Root Winter glycyrrhizin high producing strain0.705
DRR006522Root Winter glycyrrhizin high producing strain0.692
DRR006523Root Summer glycyrrhizin low producing strain27.291
DRR006524Root Summer glycyrrhizin low producing strain27.634
DRR006525Leaf Summer glycyrrhizin high producing strain16.488
DRR006526Leaf Summer glycyrrhizin high producing strain16.510

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.841
SRR2868004Drought Stress(Tissue:root)29.093
SRR2967015Control (Tissue:root)28.554

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.788
SRR9715740Leave19.091
SRR9715741Leave15.744
SRR9715739Root13.460
SRR9715742Root29.389
SRR9715743Root28.767

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h77.717
SRR8749028MeJA induced 9h63.178
SRR8749029MeJA induced 9h93.786
SRR8749030Uninduced65.616
SRR8749031Uninduced37.896
SRR8749032Uninduced44.554

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.183
SRR8400027Control-Root27.737

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved