Gene detail information of Glyur000771s00029725.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G07960.1 | 0 | Cellulose-synthase-like C12 |
| NR | XP_004501496.1 | 0 | PREDICTED: probable xyloglucan glycosyltransferase 12-like [Cicer arietinum] |
| COG | YP_004055443.1 | 6.00E-67 | family 2 glycosyl transferase [Marivirga tractuosa DSM 4126] |
| Swissprot | tr|Q9ZQB9|CSLCC_ARATH | 0 | Probable xyloglucan glycosyltransferase 12 |
| trEMBL | tr|A0A072V1K1|A0A072V1K1_MEDTR | 0 | Xyloglucan glycosyltransferase {ECO:0000313|EMBL:KEH35854.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00771 | 76840 | 80487 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000771s00029725.1 | PF13641.1 | Glyco_tranf_2_3 | 244 | 475 | 1.10E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.864 |
| SRR1783600 | control | 8.972 |
| SRR1783602 | moderate drought stress | 4.554 |
| SRR1811619 | moderate drought stress | 4.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.792 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.624 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.622 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.742 |
| SRR2967015 | Control (Tissue:root) | 32.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 56.560 |
| SRR9715740 | Leave | 44.800 |
| SRR9715741 | Leave | 48.589 |
| SRR9715739 | Root | 84.617 |
| SRR9715742 | Root | 232.267 |
| SRR9715743 | Root | 197.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 183.190 |
| SRR8749028 | MeJA induced 9h | 174.108 |
| SRR8749029 | MeJA induced 9h | 167.482 |
| SRR8749030 | Uninduced | 172.766 |
| SRR8749031 | Uninduced | 106.060 |
| SRR8749032 | Uninduced | 158.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.836 |
| SRR8400027 | Control-Root | 66.320 |