Gene detail

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Gene detail information of Glyur000771s00029726.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37750.1	2.00E-110	Integrase-type DNA-binding superfamily protein
NR	XP_007160953.1	0	hypothetical protein PHAVU_001G031200g [Phaseolus vulgaris]
Swissprot	tr\|Q38914\|ANT_ARATH	2.00E-138	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|V7CRX5\|V7CRX5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW32947.1}

Sequence

Transcript Sequence

>Glyur000771s00029726.1
CAGACACCAGAGAAGGCTCAGAAGCTAACCAAAATAGTTAATCCTACCATTTACATTCCGGGAGGTCTTTTTTTGTTTCTCTCATCATTTTCGAGATTTACGCCTTTTGGTATTACGGGGTTGATTTTCTGGGTTTAAGGAAAAGGGTTTAACATAAGTCTAGTTGGGGTGTGTTAACACTTAACAGTTTAATTTAAGAAGCAGAGGAAAAAAAAAGAGAAAAAAGAAAAGAGAGAGAGAAGGGTAAGGCAAAAACAAAGCAAAAGACGTGGTCTTTCTCACATACACAGATCCCTATGGAATGAAGTATGTGCTCCCTAGCATTCGCTTGCCGAGAGAGAATTTCATTCCTTTTGCTTAGTTTAAAGAGACCAGTTTTGTTGTGTTCGGAGAGAGACAGGTTTTTGACATTGTTGTTGTTGAGCTAGCGCATGGAACGATGAGTTTGGTTGGTGGGTAGAGAGATTTCACGGTAGACAACAAAAAAAAACGAGTCTTTACTTCACATGCAAGAGGAGGCAAGAGATCTTTTTTTCTTCTTTCAACATGATGATGATTAGTTTATTTGGCTAACAATGATTGAGTTGCCTTGTTGCTACTGCTAGAAGATTTACTGGTAGCAAATTTCAAACCTTTTTGGAGTAAGAAAAANGGAGTAGCGAAAAAAACACACACAAAGAAAGAAGATGAAGTCGATGAATGACAGTAACACCACCAGCGATGACAGAAACAATCATAATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACATGGAGGTCTCTTCTTCTGCCCCTCAGCATCATCATCATCACTACCATCATACACAAGAAGCCCAACAAGCTTCTGCTGCTGCAGCTGCAGCTGCAGCCACTGTTTCTAACACTACTNTTCCGACAACCTTCTACTTGTCCCCTTCTCACATTGGTAACTCTGGAATCTGTTATGGTGTTGGAGAAAACGGTAACTTAATCCATTCTCCTCTCACTGTAATGCCTCTCAAATCAGATGGGTCACTTTGTATCATGGAAGCTCTCGGTAGATCACAATCACAAGTGATGGTGCCGTCTTCTTCTCCCAAACTTGAAGACTTTCTAGGTGGTGCAACTATGGGAACTCACGAAAGAGAGGCAATGGCTCTAAGCTTAGACAGCATCTATTACAACGGCCAAAATGGTTCAGATCCTCAAGGCAACAGAGACCATTCCCTTGACCTTCTTTCAGAACCCTTCTGCAGGCAACAAGAAGGCCACCACCACAATATTACTCTCCAATCTCACCCATATTATTCTTCTGGACTTGCTTTTCATGGTTTATATCAAGCACCATTAGAGGAAGAAGAACAAGCTAAGGAAACAACAACCCATAATAATGTTACAGTTTGCAGCTCACAAATGCCTCAAATATCAGAAGAAGGCATTGCTTGTTTCAAAAACTGGGTGGCCCCGACAAGGGAGTATTCTTCTGCTGCTCCTCATCAAGCTCTGGAGCACCAGCAACAAATGAACGGTAGCATGGGAAATGATCGTGGAGCTGCTGCTGGTGGTGGTTCTGTTGGTACTGTTGGGTGTGGTGAGTTACAATCTCTAAGCCTTTCAATGAGTCCTGGTTCTCAATCTAGCTGTGTCACTGCTCCTAGGCAGATCTCACCTTCTGGGACTGACTCAGTAGTGGCCTTGGATACCAAAAAGAGAGGACCTGCTAAGCTGGGTCAGAAGCAGCCTGTGCATAGGAAATCTATTGACACCTTTGGGCAGAGAACTTCGCAGTATAGAGGCGTCACAAGGCACAGATGGACGGGTAGATACGAAGCACATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAGACCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGACCTTGCAGCCCTTAAGTACTGGGGACCCTCAACACATATAAACTTCCCGTTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCACTTGAGAAGAAAAAGCAGCGGTTTTTCTAGGGGTGCTTCAATGTACAGAGGGGTGACAAGGCACCACCAACATGGTAGATGGCAAGCTAGGATAGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAGGAGGAAGCAGCCGAGGCATATGATGTAGCTGCAATCAAATTCCGTGGAGTNAATGCAGTCACAAATTTCGACATATCAAGATACGATGTTGAAAGGATCATGGCCAGCAATACTCTGCTTGCAGGGGAGCTTGCAAGGAGAAACAAAGAAAGTGTTCCAAGAACTGAGGCCATTGACTATAATCACAATCATGGCGGCAATGGGGAAGCACAAGCAGTTCAAGCTCGAAACAGTACTAATGGGAATGATTCAGATTGGAAGATGGCTTTGTATCACCATAATCCACAGCAACAGCAACAGTCAAATAATAGCTGTGACCAGAAAATTGTGAACTGTGGAAGCTATAGAAACTCTGCTTTCTCTATGGCCCTACAAGATCTTGTTGGAATTGATCATTCTATAGGTTCAAGCCAGCCCATGATGGATGACTCTGGCAAGATTAATGGGACTCATTTTTCAAACCCTTCCTCTCTGGTGACCAGTTTAAGCAGCTCAAGAGAAGCTAGCCCTGATCACAAAACTGGTCCCTCTCTACTCTTTCCAAAGCCCTCAATGGATTCAAAGATTGTCAACAACAACATTGCCACTGGTGTTGTTAGTTCTTGGTTTCCCTCACCAGTTGCAGCTGCAGCTCAATTGAGGCCAGCTTCTGCTATCAATTTGTCTCACTTGCCAGTTTTTGCTGCCTGGAATGATACCTAGAGAGATATTATATCTCCTAATTATGTTAAATTATGCATGTAAAAGAAAGAAAATTTAGAGGGGTTTGGAGGGTTGGAAAAAAAAAAGTTGATGGGGAGAGGTGAGTTTTGAGGTAACATTTCATTTGGAGTATCTATTTTTCAGAGAGGGTAAGTGGAGGAATTTGGGGGATTAATGAAACTATGAAAGGCCGGTTGGGGGGGGGGCACTTTGTCTGTCATCTTTTATGTAACAAGGGTAACATGGCCTTTACAAACATAGCCTTTTGGCTGTATGTTGGAATGGAAATATGCATATTCGATGGAAAGAATTAACTAAAGGGGGGGACTAATGATTAAATTCTTGTGAAATGATGTTTGGCAATGTGGAAGTGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00771	90441	94974	-

Gene family

Gene family	subfamily
Transcription Factors Family	AP2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0003677 DNA binding GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000771s00029726.1	PF00847.15	AP2	361	417	7.20E-10
Glyur000771s00029726.1	PF00847.15	AP2	462	511	8.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	69.328
SRR1783600	control	68.687
SRR1783602	moderate drought stress	21.060
SRR1811619	moderate drought stress	21.368

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.857
DRR006520	Root Summer glycyrrhizin high producing strain	4.812
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.193
DRR006524	Root Summer glycyrrhizin low producing strain	3.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.397

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	31.484
SRR2868004	Drought Stress(Tissue:root)	23.967
SRR2967015	Control (Tissue:root)	25.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.890
SRR9715740	Leave	0.903
SRR9715741	Leave	1.629
SRR9715739	Root	6.727
SRR9715742	Root	9.702
SRR9715743	Root	8.946

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.691
SRR8749028	MeJA induced 9h	28.638
SRR8749029	MeJA induced 9h	12.592
SRR8749030	Uninduced	1.826
SRR8749031	Uninduced	0.743
SRR8749032	Uninduced	0.828

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	75.728
SRR8400027	Control-Root	95.249