Gene detail information of Glyur000774s00027673.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G05170.10Cellulose synthase family protein
NRXP_004510986.10PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Cicer arietinum]
COGYP_007142266.16.00E-17family 2 glycosyl transferase [Crinalium epipsammum PCC 9333]
Swissprottr|Q941L0|CESA3_ARATH0Cellulose synthase A catalytic subunit 3 [UDP-forming]
trEMBLtr|M5X614|M5X614_PRUPE0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007741076618109+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000774s00027673.1PF14569.1zf-UDP10855.70E-39
Glyur000774s00027673.1PF03552.9Cellulose_synt34910700


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control64.955
SRR1783600control65.348
SRR1783602moderate drought stress57.564
SRR1811619moderate drought stress57.793

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.812
DRR006520Root Summer glycyrrhizin high producing strain54.137
DRR006521Root Winter glycyrrhizin high producing strain33.807
DRR006522Root Winter glycyrrhizin high producing strain33.050
DRR006523Root Summer glycyrrhizin low producing strain47.226
DRR006524Root Summer glycyrrhizin low producing strain46.954
DRR006525Leaf Summer glycyrrhizin high producing strain51.887
DRR006526Leaf Summer glycyrrhizin high producing strain51.691

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)58.004
SRR2868004Drought Stress(Tissue:root)54.638
SRR2967015Control (Tissue:root)65.479

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.807
SRR9715740Leave62.183
SRR9715741Leave58.329
SRR9715739Root50.031
SRR9715742Root133.484
SRR9715743Root124.243

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.402
SRR8749028MeJA induced 9h34.285
SRR8749029MeJA induced 9h15.210
SRR8749030Uninduced14.836
SRR8749031Uninduced2.995
SRR8749032Uninduced5.903

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root124.654
SRR8400027Control-Root134.621

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved