Gene detail information of Glyur000774s00027675.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G41900.10CCCH-type zinc finger protein with ARM repeat domain
NRKHN37619.10Zinc finger CCCH domain-containing protein 30 [Glycine soja]
Swissprottr|P93755|C3H30_ARATH0Zinc finger CCCH domain-containing protein 30
trEMBLtr|I1M0Y0|I1M0Y0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G27280.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007743240035702+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000774s00027675.1PF12796.2Ank_2131213.10E-14
Glyur000774s00027675.1PF00642.19zf-CCCH2792997.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control97.101
SRR1783600control98.673
SRR1783602moderate drought stress105.395
SRR1811619moderate drought stress105.811

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain110.336
DRR006520Root Summer glycyrrhizin high producing strain106.543
DRR006521Root Winter glycyrrhizin high producing strain32.771
DRR006522Root Winter glycyrrhizin high producing strain32.057
DRR006523Root Summer glycyrrhizin low producing strain87.575
DRR006524Root Summer glycyrrhizin low producing strain86.933
DRR006525Leaf Summer glycyrrhizin high producing strain23.671
DRR006526Leaf Summer glycyrrhizin high producing strain22.447

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.626
SRR2868004Drought Stress(Tissue:root)52.214
SRR2967015Control (Tissue:root)51.970

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.648
SRR9715740Leave39.347
SRR9715741Leave34.145
SRR9715739Root115.268
SRR9715742Root109.024
SRR9715743Root105.939

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.753
SRR8749028MeJA induced 9h7.400
SRR8749029MeJA induced 9h2.518
SRR8749030Uninduced6.005
SRR8749031Uninduced1.743
SRR8749032Uninduced1.943

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.915
SRR8400027Control-Root60.689

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved