Gene detail information of Glyur000774s00027676.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G13130.14.00E-98Cellulase (glycosyl hydrolase family 5) protein
NRKEH18775.10hydrolyzing O-glycosyl compounds hydrolase [Medicago truncatula]
COGYP_003952726.16.00E-21cellulase [Stigmatella aurantiaca DW4/3-1]
trEMBLtr|A0A072TZ08|A0A072TZ08_MEDTR0Hydrolyzing O-glycosyl compounds hydrolase {ECO:0000313|EMBL:KEH18775.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007744080743222+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01179E3.2.1.4 EC:3.2.1.4 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000774s00027676.1PF00150.13Cellulase783492.20E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.221
SRR1783600control2.172
SRR1783602moderate drought stress1.995
SRR1811619moderate drought stress2.064

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.333
DRR006520Root Summer glycyrrhizin high producing strain7.207
DRR006521Root Winter glycyrrhizin high producing strain2.300
DRR006522Root Winter glycyrrhizin high producing strain2.153
DRR006523Root Summer glycyrrhizin low producing strain2.408
DRR006524Root Summer glycyrrhizin low producing strain2.881
DRR006525Leaf Summer glycyrrhizin high producing strain3.393
DRR006526Leaf Summer glycyrrhizin high producing strain3.484

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.527
SRR2868004Drought Stress(Tissue:root)7.006
SRR2967015Control (Tissue:root)8.260

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.704
SRR9715740Leave3.195
SRR9715741Leave3.163
SRR9715739Root0.744
SRR9715742Root3.336
SRR9715743Root2.666

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.824
SRR8749028MeJA induced 9h3.153
SRR8749029MeJA induced 9h1.634
SRR8749030Uninduced2.601
SRR8749031Uninduced0.973
SRR8749032Uninduced1.001

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.317
SRR8400027Control-Root5.310

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved