Gene detail information of Glyur000774s00027679.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G63530.2 | 2.00E-74 | RING/U-box superfamily protein |
| NR | XP_004510966.1 | 3.20E-169 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Cicer arietinum] |
| Swissprot | tr|Q8L649|BB_ARATH | 1.00E-99 | E3 ubiquitin ligase BIG BROTHER |
| trEMBL | tr|V7ALU4|V7ALU4_PHAVU | 2.00E-164 | Uncharacterized protein {ECO:0000313|EMBL:ESW05833.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00774 | 73686 | 78558 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000774s00027679.2 | PF13639.1 | zf-RING_2 | 192 | 233 | 3.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.026 |
| SRR1783600 | control | 7.759 |
| SRR1783602 | moderate drought stress | 8.704 |
| SRR1811619 | moderate drought stress | 8.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.021 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.298 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.321 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.765 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.968 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.804 |
| SRR2967015 | Control (Tissue:root) | 10.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.637 |
| SRR9715740 | Leave | 10.698 |
| SRR9715741 | Leave | 10.462 |
| SRR9715739 | Root | 7.578 |
| SRR9715742 | Root | 6.085 |
| SRR9715743 | Root | 6.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.605 |
| SRR8749028 | MeJA induced 9h | 14.790 |
| SRR8749029 | MeJA induced 9h | 16.295 |
| SRR8749030 | Uninduced | 16.327 |
| SRR8749031 | Uninduced | 12.371 |
| SRR8749032 | Uninduced | 13.837 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.384 |
| SRR8400027 | Control-Root | 14.363 |