Gene detail information of Glyur000774s00027682.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57670.1 | 6.00E-96 | C2H2-type zinc finger family protein |
| NR | XP_003539640.1 | 1.40E-174 | PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] |
| Swissprot | tr|Q9SVY1|ZWIP2_ARATH | 6.00E-118 | Zinc finger protein WIP2 |
| trEMBL | tr|K7LWM6|K7LWM6_SOYBN | 5.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36660.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00774 | 104885 | 107233 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000774s00027682.1 | PF13894.1 | zf-C2H2_4 | 224 | 243 | 7.70E-05 |
| Glyur000774s00027682.1 | PF00096.21 | zf-C2H2 | 308 | 330 | 0.019 |
| Glyur000774s00027682.1 | PF13894.1 | zf-C2H2_4 | 336 | 353 | 1.8 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.304 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.358 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.555 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.542 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.378 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.324 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.106 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.095 |
| SRR2967015 | Control (Tissue:root) | 0.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.162 |
| SRR9715740 | Leave | 1.241 |
| SRR9715741 | Leave | 1.944 |
| SRR9715739 | Root | 0.427 |
| SRR9715742 | Root | 0.309 |
| SRR9715743 | Root | 0.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.059 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.147 |
| SRR8400027 | Control-Root | 0.321 |