Gene detail information of Glyur000776s00026221.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G28860.10ATP binding cassette subfamily B19
NRXP_004510541.10PREDICTED: ABC transporter B family member 19-like [Cicer arietinum]
COGYP_629357.18.00E-99ABC transporter permease [Myxococcus xanthus DK 1622]
Swissprottr|Q9LJX0|AB19B_ARATH0ABC transporter B family member 19
trEMBLtr|G7L8C5|G7L8C5_MEDTR0ABC transporter B family-like protein {ECO:0000313|EMBL:AET01846.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00776106960114005+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05658ABCB1, CD243 EC:3.6.3.44 ABC transporters map02010
Bile secretionmap04976
MicroRNAs in cancermap05206


Gene Ontology

biological_process

GO:0006810  transport

GO:0055085  transmembrane transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0005524  ATP binding

GO:0016887  ATPase activity

GO:0042626  ATPase activity, coupled to transmembrane movement of substances

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000776s00026221.1PF00664.18ABC_membrane4225158.40E-16
Glyur000776s00026221.1PF00005.22ABC_tran5897373.30E-31
Glyur000776s00026221.1PF00664.18ABC_membrane89211652.40E-45
Glyur000776s00026221.1PF00005.22ABC_tran123213793.20E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.487
SRR1783600control0.423
SRR1783602moderate drought stress0.365
SRR1811619moderate drought stress0.335

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.297
DRR006520Root Summer glycyrrhizin high producing strain0.294
DRR006521Root Winter glycyrrhizin high producing strain0.025
DRR006522Root Winter glycyrrhizin high producing strain0.025
DRR006523Root Summer glycyrrhizin low producing strain0.549
DRR006524Root Summer glycyrrhizin low producing strain0.529
DRR006525Leaf Summer glycyrrhizin high producing strain0.126
DRR006526Leaf Summer glycyrrhizin high producing strain0.169

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.164
SRR2868004Drought Stress(Tissue:root)2.516
SRR2967015Control (Tissue:root)1.394

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.482
SRR9715740Leave0.570
SRR9715741Leave0.405
SRR9715739Root0.096
SRR9715742Root0.127
SRR9715743Root0.267

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.357
SRR8749028MeJA induced 9h1.143
SRR8749029MeJA induced 9h0.860
SRR8749030Uninduced1.811
SRR8749031Uninduced2.409
SRR8749032Uninduced1.482

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.816
SRR8400027Control-Root1.650

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved