Gene detail information of Glyur000779s00022838.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22890.12.00E-48C2H2 and C2HC zinc fingers superfamily protein
NRXP_004504082.19.36E-119PREDICTED: zinc finger protein STOP1 homolog [Cicer arietinum]
Swissprottr|Q943I6|STOP1_ORYSJ9.00E-56Zinc finger protein STOP1 homolog
trEMBLtr|V7CQP4|V7CQP4_PHAVU2.00E-115Uncharacterized protein {ECO:0000313|EMBL:ESW31658.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007796736868261-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000779s00022838.1PF00096.21zf-C2H21131351.70E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.406
SRR1783600control0.371
SRR1783602moderate drought stress0.493
SRR1811619moderate drought stress0.469

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.347
DRR006520Root Summer glycyrrhizin high producing strain3.214
DRR006521Root Winter glycyrrhizin high producing strain0.872
DRR006522Root Winter glycyrrhizin high producing strain0.811
DRR006523Root Summer glycyrrhizin low producing strain1.717
DRR006524Root Summer glycyrrhizin low producing strain1.562
DRR006525Leaf Summer glycyrrhizin high producing strain1.116
DRR006526Leaf Summer glycyrrhizin high producing strain1.132

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.919
SRR2868004Drought Stress(Tissue:root)8.132
SRR2967015Control (Tissue:root)6.613

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.917
SRR9715740Leave2.541
SRR9715741Leave19.551
SRR9715739Root3.888
SRR9715742Root2.386
SRR9715743Root3.515

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.422
SRR8749028MeJA induced 9h18.765
SRR8749029MeJA induced 9h28.816
SRR8749030Uninduced13.206
SRR8749031Uninduced8.137
SRR8749032Uninduced29.114

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.494
SRR8400027Control-Root1.615

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved