Gene detail information of Glyur000779s00022844.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22310.17.00E-153ubiquitin-specific protease 4
NRXP_006580272.10PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X2 [Glycine max]
Swissprottr|Q8LAM0|UBP4_ARATH0Ubiquitin carboxyl-terminal hydrolase 4
trEMBLtr|I1K4J0|I1K4J0_SOYBN0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007798578490490+


Gene family

Gene familysubfamily
Ubiquitin FamilyUSP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process


molecular_function

GO:0036459  thiol-dependent ubiquitinyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000779s00022844.1PF00443.24UCH403117.20E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.060
SRR1783600control9.278
SRR1783602moderate drought stress7.549
SRR1811619moderate drought stress7.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.929
DRR006520Root Summer glycyrrhizin high producing strain14.296
DRR006521Root Winter glycyrrhizin high producing strain16.200
DRR006522Root Winter glycyrrhizin high producing strain14.687
DRR006523Root Summer glycyrrhizin low producing strain18.309
DRR006524Root Summer glycyrrhizin low producing strain18.265
DRR006525Leaf Summer glycyrrhizin high producing strain11.722
DRR006526Leaf Summer glycyrrhizin high producing strain10.835

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.130
SRR2868004Drought Stress(Tissue:root)20.782
SRR2967015Control (Tissue:root)21.211

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.614
SRR9715740Leave21.015
SRR9715741Leave21.175
SRR9715739Root7.058
SRR9715742Root14.718
SRR9715743Root12.893

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.089
SRR8749028MeJA induced 9h16.519
SRR8749029MeJA induced 9h13.429
SRR8749030Uninduced13.008
SRR8749031Uninduced21.296
SRR8749032Uninduced20.210

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.225
SRR8400027Control-Root22.969

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved