Gene detail information of Glyur000779s00022845.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22300.24.00E-170signal responsive 1
NRXP_007159660.10hypothetical protein PHAVU_002G256500g [Phaseolus vulgaris]
COGYP_001975179.12.00E-06ankyrin repeat domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
Swissprottr|Q8GSA7|CMTA3_ARATH0Calmodulin-binding transcription activator 3
trEMBLtr|A0A072TTJ2|A0A072TTJ2_MEDTR0Calmodulin-binding transcription activator {ECO:0000313|EMBL:KEH20829.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007798964899197-


Gene family

Gene familysubfamily
Transcription Factors FamilyCAMTA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000779s00022845.1PF03859.11CG-12742.30E-37
Glyur000779s00022845.1PF01833.19TIG3254020.00025
Glyur000779s00022845.1PF12796.2Ank_24685431.50E-08
Glyur000779s00022845.1PF00612.22IQ6396570.0057
Glyur000779s00022845.1PF00612.22IQ6636800.00014


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.642
SRR1783600control3.509
SRR1783602moderate drought stress1.551
SRR1811619moderate drought stress1.516

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.224
DRR006520Root Summer glycyrrhizin high producing strain7.081
DRR006521Root Winter glycyrrhizin high producing strain3.536
DRR006522Root Winter glycyrrhizin high producing strain3.423
DRR006523Root Summer glycyrrhizin low producing strain37.256
DRR006524Root Summer glycyrrhizin low producing strain37.405
DRR006525Leaf Summer glycyrrhizin high producing strain3.136
DRR006526Leaf Summer glycyrrhizin high producing strain3.053

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.728
SRR2868004Drought Stress(Tissue:root)15.387
SRR2967015Control (Tissue:root)8.077

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.453
SRR9715740Leave19.732
SRR9715741Leave31.920
SRR9715739Root3.979
SRR9715742Root19.753
SRR9715743Root16.669

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.149
SRR8749028MeJA induced 9h34.229
SRR8749029MeJA induced 9h40.094
SRR8749030Uninduced32.423
SRR8749031Uninduced20.029
SRR8749032Uninduced19.512

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.226
SRR8400027Control-Root9.564

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved