Gene detail information of Glyur000779s00022851.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10250.1 | 7.00E-119 | Phototropic-responsive NPH3 family protein |
| NR | KEH20836.1 | 0 | phototropic-responsive NPH3 family protein [Medicago truncatula] |
| Swissprot | tr|Q9LFU0|DOT3_ARATH | 7.00E-146 | BTB/POZ domain-containing protein DOT3 |
| trEMBL | tr|A0A072TUJ7|A0A072TUJ7_MEDTR | 0 | Phototropic-responsive NPH3 family protein {ECO:0000313|EMBL:KEH20836.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00779 | 116783 | 119214 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000779s00022851.1 | PF03000.9 | NPH3 | 213 | 376 | 1.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.189 |
| SRR1783600 | control | 0.150 |
| SRR1783602 | moderate drought stress | 0.185 |
| SRR1811619 | moderate drought stress | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.260 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.113 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.142 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.822 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.334 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.424 |
| SRR2967015 | Control (Tissue:root) | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.583 |
| SRR9715740 | Leave | 4.451 |
| SRR9715741 | Leave | 3.174 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.133 |
| SRR9715743 | Root | 0.106 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.354 |
| SRR8749028 | MeJA induced 9h | 3.295 |
| SRR8749029 | MeJA induced 9h | 2.446 |
| SRR8749030 | Uninduced | 2.121 |
| SRR8749031 | Uninduced | 0.928 |
| SRR8749032 | Uninduced | 2.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.071 |
| SRR8400027 | Control-Root | 0.458 |