Gene detail information of Glyur000781s00024261.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13430.10isopropyl malate isomerase large subunit 1
NRXP_004497788.10PREDICTED: 3-isopropylmalate dehydratase-like [Cicer arietinum]
COGYP_722385.10homoaconitate hydratase family protein [Trichodesmium erythraeum IMS101]
Swissprottr|Q94AR8|LEUC_ARATH03-isopropylmalate dehydratase large subunit (Precursor)
trEMBLtr|G7I6Q7|G7I6Q7_MEDTR03-isopropylmalate dehydratase, large subunit {ECO:0000313|EMBL:AES60441.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007814475251595+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01703leuC EC:4.2.1.33 4.2.1.35 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000781s00024261.1PF00330.15Aconitase643141.50E-47
Glyur000781s00024261.1PF00330.15Aconitase3324798.70E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control95.419
SRR1783600control96.536
SRR1783602moderate drought stress130.962
SRR1811619moderate drought stress129.914

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain84.633
DRR006520Root Summer glycyrrhizin high producing strain83.899
DRR006521Root Winter glycyrrhizin high producing strain124.611
DRR006522Root Winter glycyrrhizin high producing strain121.895
DRR006523Root Summer glycyrrhizin low producing strain66.246
DRR006524Root Summer glycyrrhizin low producing strain66.291
DRR006525Leaf Summer glycyrrhizin high producing strain76.868
DRR006526Leaf Summer glycyrrhizin high producing strain75.511

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)79.152
SRR2868004Drought Stress(Tissue:root)79.910
SRR2967015Control (Tissue:root)85.286

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave106.081
SRR9715740Leave100.530
SRR9715741Leave134.523
SRR9715739Root151.724
SRR9715742Root115.164
SRR9715743Root125.023

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h115.122
SRR8749028MeJA induced 9h97.150
SRR8749029MeJA induced 9h91.590
SRR8749030Uninduced132.184
SRR8749031Uninduced133.082
SRR8749032Uninduced145.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root127.251
SRR8400027Control-Root114.692

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved