Gene detail information of Glyur000782s00036637.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G60850.13.00E-24OBF binding protein 4
NRXP_010101639.12.33E-45Dof zinc finger protein [Morus notabilis]
Swissprottr|Q8LDR0|DOF54_ARATH1.00E-36Dof zinc finger protein DOF5.4
trEMBLtr|W9RP28|W9RP28_9ROSA9.00E-46Dof zinc finger protein {ECO:0000313|EMBL:EXB89108.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00782110104112798+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-Dof


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000782s00036637.1PF02701.10zf-Dof32911.10E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.645
SRR1783600control7.821
SRR1783602moderate drought stress17.202
SRR1811619moderate drought stress17.068

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.609
DRR006520Root Summer glycyrrhizin high producing strain8.946
DRR006521Root Winter glycyrrhizin high producing strain10.091
DRR006522Root Winter glycyrrhizin high producing strain11.026
DRR006523Root Summer glycyrrhizin low producing strain6.734
DRR006524Root Summer glycyrrhizin low producing strain5.838
DRR006525Leaf Summer glycyrrhizin high producing strain6.864
DRR006526Leaf Summer glycyrrhizin high producing strain7.295

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.964
SRR2868004Drought Stress(Tissue:root)10.920
SRR2967015Control (Tissue:root)5.027

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.029
SRR9715740Leave2.352
SRR9715741Leave2.531
SRR9715739Root11.596
SRR9715742Root24.098
SRR9715743Root21.029

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.797
SRR8749028MeJA induced 9h12.971
SRR8749029MeJA induced 9h11.306
SRR8749030Uninduced1.013
SRR8749031Uninduced0.113
SRR8749032Uninduced0.259

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.236
SRR8400027Control-Root14.766

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved