Gene detail information of Glyur000783s00023120.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20720.10RAD3-like DNA-binding helicase protein
NRXP_004512601.10PREDICTED: Fanconi anemia group J protein homolog isoform X1 [Cicer arietinum]
COGNP_281042.16.00E-18helicase [Halobacterium sp. NRC-1]
Swissprottr|Q8W4M7|ERCC2_ARATH5.00E-36DNA repair helicase UVH6
trEMBLtr|K7M8G7|K7M8G7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39783.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007834289960718-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15362BRIP1, BACH1, FANCJ EC:3.6.4.12 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0004003  ATP-dependent DNA helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000783s00023120.2PF06733.10DEAD_21362981.70E-42
Glyur000783s00023120.2PF13307.1Helicase_C_25457252.90E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.912
SRR1783600control1.977
SRR1783602moderate drought stress1.335
SRR1811619moderate drought stress1.331

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.714
DRR006520Root Summer glycyrrhizin high producing strain1.624
DRR006521Root Winter glycyrrhizin high producing strain2.459
DRR006522Root Winter glycyrrhizin high producing strain2.355
DRR006523Root Summer glycyrrhizin low producing strain1.524
DRR006524Root Summer glycyrrhizin low producing strain1.673
DRR006525Leaf Summer glycyrrhizin high producing strain0.530
DRR006526Leaf Summer glycyrrhizin high producing strain0.480

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.326
SRR2868004Drought Stress(Tissue:root)2.936
SRR2967015Control (Tissue:root)2.910

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.111
SRR9715740Leave0.223
SRR9715741Leave0.485
SRR9715739Root0.052
SRR9715742Root0.465
SRR9715743Root0.389

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.957
SRR8749028MeJA induced 9h9.666
SRR8749029MeJA induced 9h6.720
SRR8749030Uninduced1.917
SRR8749031Uninduced1.600
SRR8749032Uninduced1.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.438
SRR8400027Control-Root4.012

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved