Gene detail information of Glyur000784s00031231.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19810.17.00E-93Glycosyl hydrolase family protein with chitinase insertion domain
NRAFK36566.10unknown [Lotus japonicus]
COGYP_007146068.17.00E-33chitinase [Cylindrospermum stagnale PCC 7417]
trEMBLtr|I3S8H4|I3S8H4_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK36566.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007842144423307+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH18


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01183E3.2.1.14 EC:3.2.1.14 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006032  chitin catabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568  chitinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000784s00031231.1PF00704.23Glyco_hydro_18333502.30E-82


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control62.028
SRR1783600control62.116
SRR1783602moderate drought stress33.626
SRR1811619moderate drought stress33.535

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.517
DRR006520Root Summer glycyrrhizin high producing strain8.435
DRR006521Root Winter glycyrrhizin high producing strain0.981
DRR006522Root Winter glycyrrhizin high producing strain0.956
DRR006523Root Summer glycyrrhizin low producing strain12.887
DRR006524Root Summer glycyrrhizin low producing strain12.988
DRR006525Leaf Summer glycyrrhizin high producing strain334.869
DRR006526Leaf Summer glycyrrhizin high producing strain331.640

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.530
SRR2868004Drought Stress(Tissue:root)41.928
SRR2967015Control (Tissue:root)21.130

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave123.821
SRR9715740Leave97.681
SRR9715741Leave48.864
SRR9715739Root19.088
SRR9715742Root40.683
SRR9715743Root35.225

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.090
SRR8749028MeJA induced 9h1.659
SRR8749029MeJA induced 9h0.905
SRR8749030Uninduced0.973
SRR8749031Uninduced2.197
SRR8749032Uninduced0.597

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root97.441
SRR8400027Control-Root112.015

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved