Gene detail information of Glyur000785s00024153.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11190.12.00E-52Integrase-type DNA-binding superfamily protein
NRAFK46841.11.54E-102unknown [Lotus japonicus]
Swissprottr|Q3E958|SHN3_ARATH2.00E-76Ethylene-responsive transcription factor SHINE 3
trEMBLtr|I3T2U9|I3T2U9_LOTJA6.00E-103Uncharacterized protein {ECO:0000313|EMBL:AFK46841.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007855079952285+


Gene family

Gene familysubfamily
Transcription Factors FamilyERF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000785s00024153.1PF00847.15AP25558.50E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.566
SRR1783600control0.290
SRR1783602moderate drought stress0.692
SRR1811619moderate drought stress0.712

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.200
DRR006520Root Summer glycyrrhizin high producing strain1.223
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain6.230
DRR006526Leaf Summer glycyrrhizin high producing strain7.114

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.543
SRR2868004Drought Stress(Tissue:root)0.137
SRR2967015Control (Tissue:root)0.145

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.161
SRR9715740Leave0.605
SRR9715741Leave0.712
SRR9715739Root0.190
SRR9715742Root0.321
SRR9715743Root0.458

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.179
SRR8749028MeJA induced 9h0.344
SRR8749029MeJA induced 9h0.402
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.172

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.538
SRR8400027Control-Root0.651

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved