Gene detail information of Glyur000785s00024164.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32410.10cellulose synthase 1
NRXP_004501313.10PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming]-like [Cicer arietinum]
COGYP_007129238.13.00E-16glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprottr|O48946|CESA1_ARATH0Cellulose synthase A catalytic subunit 1 [UDP-forming]
trEMBLtr|V7ATW9|V7ATW9_PHAVU0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0078596057102144-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000785s00024164.1PF14569.1zf-UDP291087.10E-50
Glyur000785s00024164.1PF03552.9Cellulose_synt35910760


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control221.535
SRR1783600control222.920
SRR1783602moderate drought stress171.123
SRR1811619moderate drought stress170.569

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain119.344
DRR006520Root Summer glycyrrhizin high producing strain118.063
DRR006521Root Winter glycyrrhizin high producing strain54.263
DRR006522Root Winter glycyrrhizin high producing strain52.882
DRR006523Root Summer glycyrrhizin low producing strain120.053
DRR006524Root Summer glycyrrhizin low producing strain119.651
DRR006525Leaf Summer glycyrrhizin high producing strain57.239
DRR006526Leaf Summer glycyrrhizin high producing strain57.051

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)261.121
SRR2868004Drought Stress(Tissue:root)220.618
SRR2967015Control (Tissue:root)208.116

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.432
SRR9715740Leave57.338
SRR9715741Leave73.079
SRR9715739Root111.001
SRR9715742Root213.653
SRR9715743Root200.361

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h90.350
SRR8749028MeJA induced 9h114.957
SRR8749029MeJA induced 9h59.969
SRR8749030Uninduced39.393
SRR8749031Uninduced13.892
SRR8749032Uninduced21.179

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root261.547
SRR8400027Control-Root316.281

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved