Gene detail information of Glyur000786s00023852.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G46330.1 | 1.00E-130 | Leucine-rich receptor-like protein kinase family protein |
| NR | XP_009619421.1 | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Nicotiana tomentosiformis] |
| COG | YP_004775215.1 | 4.00E-50 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|C0LGQ5|GSO1_ARATH | 6.00E-146 | LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor) |
| trEMBL | tr|K4BE26|K4BE26_SOLLC | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g006030.2.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00786 | 660 | 9013 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000786s00023852.1 | PF08263.7 | LRRNT_2 | 33 | 71 | 7.20E-07 |
| Glyur000786s00023852.1 | PF00560.28 | LRR_1 | 148 | 170 | 0.19 |
| Glyur000786s00023852.1 | PF08263.7 | LRRNT_2 | 240 | 279 | 5.30E-07 |
| Glyur000786s00023852.1 | PF00560.28 | LRR_1 | 356 | 378 | 0.19 |
| Glyur000786s00023852.1 | PF00560.28 | LRR_1 | 585 | 604 | 0.75 |
| Glyur000786s00023852.1 | PF00560.28 | LRR_1 | 766 | 786 | 0.29 |
| Glyur000786s00023852.1 | PF13855.1 | LRR_8 | 812 | 872 | 2.10E-06 |
| Glyur000786s00023852.1 | PF07714.12 | Pkinase_Tyr | 987 | 1180 | 8.50E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.010 |
| SRR1783600 | control | 0.010 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.062 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.228 |
| SRR2967015 | Control (Tissue:root) | 4.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.013 |
| SRR9715740 | Leave | 0.009 |
| SRR9715741 | Leave | 0.032 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.010 |
| SRR8749028 | MeJA induced 9h | 0.018 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.155 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.820 |
| SRR8400027 | Control-Root | 2.189 |