Gene detail information of Glyur000786s00023866.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G25054.11.00E-109UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
NRXP_004498250.10PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2-like [Cicer arietinum]
COGYP_007168859.11.00E-76UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase [Halothece sp. PCC 7418]
Swissprottr|Q9FE36|LPXC1_ARATH1.00E-141Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 (Precursor)
trEMBLtr|I1JDH4|I1JDH4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G09350.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00786106810113277+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE11


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02535lpxC EC:3.5.1.108 Lipopolysaccharide biosynthesis map00540


Gene Ontology

biological_process

GO:0009245  lipid A biosynthetic process


molecular_function

GO:0008759  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000786s00023866.1PF03331.8LpxC223094.10E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.125
SRR1783600control4.190
SRR1783602moderate drought stress4.739
SRR1811619moderate drought stress4.748

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.190
DRR006520Root Summer glycyrrhizin high producing strain5.353
DRR006521Root Winter glycyrrhizin high producing strain4.061
DRR006522Root Winter glycyrrhizin high producing strain4.002
DRR006523Root Summer glycyrrhizin low producing strain4.351
DRR006524Root Summer glycyrrhizin low producing strain4.069
DRR006525Leaf Summer glycyrrhizin high producing strain3.752
DRR006526Leaf Summer glycyrrhizin high producing strain3.960

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.116
SRR2868004Drought Stress(Tissue:root)6.289
SRR2967015Control (Tissue:root)6.488

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.710
SRR9715740Leave8.882
SRR9715741Leave9.512
SRR9715739Root4.259
SRR9715742Root7.196
SRR9715743Root5.835

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.583
SRR8749028MeJA induced 9h13.835
SRR8749029MeJA induced 9h15.078
SRR8749030Uninduced25.194
SRR8749031Uninduced16.176
SRR8749032Uninduced15.665

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.265
SRR8400027Control-Root8.152

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved