Gene detail information of Glyur000787s00032056.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41700.3 | 2.00E-11 | ubiquitin conjugating enzyme 8 |
| NR | AAT80909.1 | 2.65E-13 | ubiquitin conjugating enzyme E2 [Lemna minor] |
| Swissprot | tr|P35131|UBC8_ARATH | 1.00E-14 | Ubiquitin-conjugating enzyme E2 8 |
| trEMBL | tr|Q6B440|Q6B440_LEMMI | 1.00E-13 | Ubiquitin conjugating enzyme E2 {ECO:0000313|EMBL:AAT80909.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00787 | 50140 | 54993 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | UBC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.611 |
| SRR1783600 | control | 1.683 |
| SRR1783602 | moderate drought stress | 3.319 |
| SRR1811619 | moderate drought stress | 3.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.509 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.751 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.354 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.632 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.584 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.483 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.868 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.670 |
| SRR2967015 | Control (Tissue:root) | 4.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.678 |
| SRR9715740 | Leave | 2.355 |
| SRR9715741 | Leave | 2.048 |
| SRR9715739 | Root | 0.592 |
| SRR9715742 | Root | 0.767 |
| SRR9715743 | Root | 1.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.457 |
| SRR8749028 | MeJA induced 9h | 2.510 |
| SRR8749029 | MeJA induced 9h | 2.086 |
| SRR8749030 | Uninduced | 1.969 |
| SRR8749031 | Uninduced | 1.935 |
| SRR8749032 | Uninduced | 1.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.682 |
| SRR8400027 | Control-Root | 6.157 |